JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
G6PC2_chr2_168896291_168915000	0/1	a0001	355	210	35	40	108	8	18	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	a0002	355	122	0	22	71	6	23	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	a0003	355	45	27	13	2	2	1	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	a0004	355	34	33	1	0	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	a0005	355	7	0	0	7	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	a0006	355	3	0	0	3	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	a0007	355	1	0	0	1	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	a0008	355	1	0	0	1	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	a0009	355	1	1	0	0	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC2_chr2_168896291_168915000	0/0	a0010	355	1	0	0	1	0	0	copy fasta	G6PC2	chr2	168896291	168915000
G6PC3_chr17_44065735_44081344	1/1	a0001	346	370	83	79	154	9	43	copy fasta	G6PC3	chr17	44065735	44081344
G6PC3_chr17_44065735_44081344	0/0	a0002	346	5	5	0	0	0	0	copy fasta	G6PC3	chr17	44065735	44081344
G6PC3_chr17_44065735_44081344	0/0	a0003	346	5	4	1	0	0	0	copy fasta	G6PC3	chr17	44065735	44081344
G6PC3_chr17_44065735_44081344	0/0	a0004	346	1	0	0	1	0	0	copy fasta	G6PC3	chr17	44065735	44081344
G6PC3_chr17_44065735_44081344	0/0	a0005	346	1	0	0	1	0	0	copy fasta	G6PC3	chr17	44065735	44081344
G6PC3_chr17_44065735_44081344	0/0	a0006	346	1	0	0	0	0	1	copy fasta	G6PC3	chr17	44065735	44081344
G6PC3_chr17_44065735_44081344	0/0	a0007	346	1	0	0	0	1	0	copy fasta	G6PC3	chr17	44065735	44081344
G6PD_chrX_154526391_154551846	1/1	a0001	515	252	55	55	105	8	27	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	a0002	515	16	15	1	0	0	0	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	a0003	515	6	6	0	0	0	0	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	a0004	78	2	0	0	2	0	0	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	a0005	515	2	2	0	0	0	0	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	a0006	41	1	0	0	1	0	0	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	a0007	114	1	0	0	1	0	0	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	a0008	515	1	0	0	0	1	0	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	a0009	515	1	0	0	0	0	1	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	a0010	346	1	0	0	1	0	0	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	a0011	515	1	0	0	1	0	0	copy fasta	G6PD	chrX	154526391	154551846
G6PD_chrX_154526391_154551846	0/0	a0012	41	1	0	0	1	0	0	copy fasta	G6PD	chrX	154526391	154551846
GAA_chr17_80096581_80124881	0/1	a0001	952	166	43	40	45	13	24	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	1/0	a0002	952	103	29	25	40	2	6	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	a0003	952	36	3	0	27	0	6	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	a0004	952	34	0	3	31	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	a0005	952	30	0	3	23	1	3	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	a0006	952	19	15	2	0	0	2	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	a0007	952	3	2	1	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	a0008	952	3	0	0	0	0	3	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	a0009	952	2	0	0	2	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	a0010	952	2	0	0	2	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	a0011	952	1	0	0	1	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	a0012	952	1	1	0	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	a0013	952	1	0	0	1	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	a0014	952	1	0	0	0	0	1	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	a0015	952	1	1	0	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	a0016	952	1	1	0	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	a0017	952	1	0	1	0	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	a0018	952	1	0	0	1	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	a0019	952	1	0	0	1	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	a0020	952	1	0	0	1	0	0	copy fasta	GAA	chr17	80096581	80124881
GAA_chr17_80096581_80124881	0/0	a0021	952	1	0	1	0	0	0	copy fasta	GAA	chr17	80096581	80124881