JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GABRG1_chr4_46030769_46129054	0/0	a0003	465	1	0	0	1	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	a0004	465	1	0	0	1	0	0	copy fasta	GABRG1	chr4	46030769	46129054
GABRG1_chr4_46030769_46129054	0/0	a0005	465	1	0	0	0	0	1	copy fasta	GABRG1	chr4	46030769	46129054
GABRG2_chr5_162062773_162160526	1/1	a0001	475	327	84	42	153	12	34	copy fasta	GABRG2	chr5	162062773	162160526
GABRG2_chr5_162062773_162160526	0/0	a0002	475	1	0	0	1	0	0	copy fasta	GABRG2	chr5	162062773	162160526
GABRG3_chr15_26966181_27546984	0/0	a0001	467	91	49	20	2	6	14	copy fasta	GABRG3	chr15	26966181	27546984
GABRG3_chr15_26966181_27546984	0/0	a0002	467	1	1	0	0	0	0	copy fasta	GABRG3	chr15	26966181	27546984
GABRP_chr5_170778725_170819047	1/1	a0001	440	247	63	58	80	9	35	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	a0002	440	96	23	13	45	5	10	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	a0003	440	6	4	0	1	0	1	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	a0004	440	5	0	0	5	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	a0005	440	2	2	0	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	a0006	440	1	0	1	0	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	a0007	440	1	0	0	1	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	a0008	440	1	0	0	1	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	a0009	440	1	0	0	1	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	a0010	194	1	0	0	1	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRP_chr5_170778725_170819047	0/0	a0011	440	1	0	0	1	0	0	copy fasta	GABRP	chr5	170778725	170819047
GABRQ_chrX_152632895_152662542	0/0	a0001	632	159	50	12	78	1	18	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	1/1	a0002	632	123	19	42	46	6	8	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	a0003	631	13	12	1	0	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	a0004	632	1	1	0	0	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	a0005	468	1	0	0	1	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRQ_chrX_152632895_152662542	0/0	a0006	84	1	0	0	1	0	0	copy fasta	GABRQ	chrX	152632895	152662542
GABRR1_chr6_89172504_89222358	1/0	a0001	479	25	0	2	18	0	4	copy fasta	GABRR1	chr6	89172504	89222358
GABRR2_chr6_89249464_89320299	1/0	a0001	465	274	50	56	116	14	37	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	a0002	465	86	43	9	27	2	5	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	a0003	465	2	1	1	0	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	a0004	465	1	1	0	0	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	a0005	465	1	1	0	0	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/1	a0006	465	1	0	0	0	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR2_chr6_89249464_89320299	0/0	a0007	465	1	0	0	1	0	0	copy fasta	GABRR2	chr6	89249464	89320299
GABRR3_chr3_97980102_98040315	1/1	a0001	467	328	64	57	156	12	37	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	a0002	204	46	20	15	2	4	5	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	a0003	467	4	4	0	0	0	0	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	a0004	467	2	0	0	0	0	2	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	a0005	467	1	0	0	0	0	1	copy fasta	GABRR3	chr3	97980102	98040315
GABRR3_chr3_97980102_98040315	0/0	a0006	467	1	0	0	0	0	1	copy fasta	GABRR3	chr3	97980102	98040315
GAD1_chr2_170811887_170866151	1/1	a0001	594	379	69	67	184	15	42	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	a0002	594	23	23	0	0	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	a0003	594	5	0	0	5	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	a0004	594	1	0	0	1	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	a0005	594	1	0	0	1	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	a0006	594	1	0	1	0	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	a0007	594	1	0	0	0	1	0	copy fasta	GAD1	chr2	170811887	170866151
GAD1_chr2_170811887_170866151	0/0	a0008	594	1	0	0	1	0	0	copy fasta	GAD1	chr2	170811887	170866151
GAD2_chr10_26211774_26309558	1/1	a0001	585	286	82	57	110	9	26	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	a0002	585	5	0	3	0	2	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	a0003	585	2	0	2	0	0	0	copy fasta	GAD2	chr10	26211774	26309558
GAD2_chr10_26211774_26309558	0/0	a0004	585	1	0	0	0	1	0	copy fasta	GAD2	chr10	26211774	26309558