JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GAGE12E_chrX_49546289_49563645	0/0	a0010	117	1	0	1	0	0	0	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	a0011	117	1	0	0	1	0	0	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12E_chrX_49546289_49563645	0/0	a0012	117	1	0	1	0	0	0	copy fasta	GAGE12E	chrX	49546289	49563645
GAGE12F_chrX_49555842_49573205	0/0	a0001	117	35	10	3	16	2	4	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	a0002	117	17	8	4	3	0	2	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	a0003	116	10	2	0	6	1	1	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	a0004	116	9	5	0	3	0	1	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	a0005	117	8	0	1	5	0	2	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	a0006	117	5	0	1	2	0	2	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	a0007	116	4	0	2	1	0	1	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	a0008	117	2	2	0	0	0	0	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	a0009	117	2	0	0	2	0	0	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	a0010	117	2	0	0	2	0	0	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	a0011	104	1	1	0	0	0	0	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	a0012	117	1	1	0	0	0	0	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	a0013	85	1	0	0	1	0	0	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	a0014	119	1	0	0	1	0	0	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12F_chrX_49555842_49573205	0/0	a0015	117	1	0	1	0	0	0	copy fasta	GAGE12F	chrX	49555842	49573205
GAGE12G_chrX_49565400_49582754	0/0	a0001	116	28	11	1	13	1	2	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	a0002	116	27	1	6	19	0	1	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	a0003	117	23	16	0	6	0	1	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	a0004	117	5	0	1	3	1	0	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	a0005	116	4	0	2	1	0	1	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	a0006	117	2	0	0	2	0	0	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	a0007	117	2	0	1	1	0	0	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	a0008	60	1	0	0	1	0	0	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	a0009	22	1	0	0	1	0	0	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	a0010	72	1	0	0	1	0	0	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12G_chrX_49565400_49582754	0/0	a0011	117	1	1	0	0	0	0	copy fasta	GAGE12G	chrX	49565400	49582754
GAGE12H_chrX_49574949_49592301	0/0	a0001	116	38	7	8	18	2	3	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	a0002	116	37	5	11	14	2	5	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	a0003	117	19	9	2	6	2	0	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	a0004	116	5	0	1	3	1	0	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	a0005	117	5	2	1	1	0	1	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	a0006	117	3	2	0	1	0	0	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	a0007	117	2	1	1	0	0	0	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	a0008	32	1	1	0	0	0	0	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	a0009	60	1	0	0	1	0	0	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	a0010	104	1	0	0	1	0	0	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	a0011	116	1	0	0	1	0	0	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	a0012	104	1	0	0	0	0	1	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	a0013	117	1	0	0	1	0	0	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12H_chrX_49574949_49592301	0/0	a0014	117	1	0	0	1	0	0	copy fasta	GAGE12H	chrX	49574949	49592301
GAGE12J_chrX_49317037_49334384	0/0	a0001	117	83	4	16	43	6	14	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE12J_chrX_49317037_49334384	0/0	a0002	117	65	2	12	44	1	6	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE12J_chrX_49317037_49334384	0/0	a0003	117	20	15	5	0	0	0	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE12J_chrX_49317037_49334384	1/0	a0004	117	8	4	0	0	2	1	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE12J_chrX_49317037_49334384	0/0	a0005	117	4	0	0	4	0	0	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE12J_chrX_49317037_49334384	0/0	a0006	117	4	0	3	0	0	1	copy fasta	GAGE12J	chrX	49317037	49334384
GAGE12J_chrX_49317037_49334384	0/0	a0007	116	2	0	0	0	1	1	copy fasta	GAGE12J	chrX	49317037	49334384