JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GAK_chr4_844277_937316	0/0	a0013	1311	1	0	0	1	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	a0014	1311	1	1	0	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	a0015	1311	1	0	0	1	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	a0016	1311	1	0	0	1	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	a0017	1311	1	1	0	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	a0018	1311	1	0	0	1	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	a0019	1311	1	1	0	0	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	a0020	1311	1	0	0	1	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	a0021	1311	1	0	0	1	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	a0022	1311	1	0	0	1	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	a0023	227	1	0	0	1	0	0	copy fasta	GAK	chr4	844277	937316
GAK_chr4_844277_937316	0/0	a0024	1311	1	0	0	0	1	0	copy fasta	GAK	chr4	844277	937316
GAL3ST1_chr22_30549635_30579665	1/0	a0001	423	282	46	61	122	14	38	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST1_chr22_30549635_30579665	0/1	a0002	423	155	39	23	78	3	11	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST1_chr22_30549635_30579665	0/0	a0003	423	8	6	0	2	0	0	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST1_chr22_30549635_30579665	0/0	a0004	423	2	0	0	0	1	1	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST1_chr22_30549635_30579665	0/0	a0005	423	2	2	0	0	0	0	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST1_chr22_30549635_30579665	0/0	a0006	423	1	0	1	0	0	0	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST1_chr22_30549635_30579665	0/0	a0007	423	1	1	0	0	0	0	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST1_chr22_30549635_30579665	0/0	a0008	423	1	0	1	0	0	0	copy fasta	GAL3ST1	chr22	30549635	30579665
GAL3ST2_chr2_241771822_241809287	1/1	a0001	398	143	35	33	44	9	20	copy fasta	GAL3ST2	chr2	241771822	241809287
GAL3ST2_chr2_241771822_241809287	0/0	a0002	398	107	44	8	44	4	7	copy fasta	GAL3ST2	chr2	241771822	241809287
GAL3ST2_chr2_241771822_241809287	0/0	a0003	398	44	7	9	24	0	4	copy fasta	GAL3ST2	chr2	241771822	241809287
GAL3ST2_chr2_241771822_241809287	0/0	a0004	398	6	1	1	1	1	2	copy fasta	GAL3ST2	chr2	241771822	241809287
GAL3ST2_chr2_241771822_241809287	0/0	a0005	398	5	1	2	0	2	0	copy fasta	GAL3ST2	chr2	241771822	241809287
GAL3ST2_chr2_241771822_241809287	0/0	a0006	398	4	0	0	4	0	0	copy fasta	GAL3ST2	chr2	241771822	241809287
GAL3ST2_chr2_241771822_241809287	0/0	a0007	398	2	2	0	0	0	0	copy fasta	GAL3ST2	chr2	241771822	241809287
GAL3ST2_chr2_241771822_241809287	0/0	a0008	398	1	0	0	1	0	0	copy fasta	GAL3ST2	chr2	241771822	241809287
GAL3ST2_chr2_241771822_241809287	0/0	a0009	398	1	0	0	0	0	1	copy fasta	GAL3ST2	chr2	241771822	241809287
GAL3ST2_chr2_241771822_241809287	0/0	a0010	398	1	0	1	0	0	0	copy fasta	GAL3ST2	chr2	241771822	241809287
GAL3ST3_chr11_66035765_66054161	1/1	a0001	431	310	75	52	147	12	22	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	a0002	431	53	12	12	20	2	7	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	a0003	213	16	3	2	10	0	1	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	a0004	213	4	0	0	4	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	a0005	431	3	2	1	0	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	a0006	213	2	0	0	2	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	a0007	431	1	0	1	0	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	a0008	431	1	1	0	0	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	a0009	189	1	1	0	0	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	a0010	431	1	0	0	1	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	a0011	431	1	0	0	1	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST3_chr11_66035765_66054161	0/0	a0012	431	1	0	0	1	0	0	copy fasta	GAL3ST3	chr11	66035765	66054161
GAL3ST4_chr7_100154244_100173617	0/0	a0001	486	208	27	30	115	8	28	copy fasta	GAL3ST4	chr7	100154244	100173617
GAL3ST4_chr7_100154244_100173617	1/1	a0002	486	161	38	36	55	8	22	copy fasta	GAL3ST4	chr7	100154244	100173617
GAL3ST4_chr7_100154244_100173617	0/0	a0003	486	11	0	0	11	0	0	copy fasta	GAL3ST4	chr7	100154244	100173617
GAL3ST4_chr7_100154244_100173617	0/0	a0004	486	10	7	3	0	0	0	copy fasta	GAL3ST4	chr7	100154244	100173617
GAL3ST4_chr7_100154244_100173617	0/0	a0005	486	4	3	1	0	0	0	copy fasta	GAL3ST4	chr7	100154244	100173617
GAL3ST4_chr7_100154244_100173617	0/0	a0006	486	2	2	0	0	0	0	copy fasta	GAL3ST4	chr7	100154244	100173617
GAL3ST4_chr7_100154244_100173617	0/0	a0007	288	2	2	0	0	0	0	copy fasta	GAL3ST4	chr7	100154244	100173617
GAL3ST4_chr7_100154244_100173617	0/0	a0008	486	1	1	0	0	0	0	copy fasta	GAL3ST4	chr7	100154244	100173617