Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AIFM1_chrX_130124362_130170841	0/0	a0005	613	1	1	0	0	0	0	copy fasta	AIFM1	chrX	130124362	130170841
AIFM1_chrX_130124362_130170841	0/0	a0006	55	1	1	0	0	0	0	copy fasta	AIFM1	chrX	130124362	130170841
AIFM1_chrX_130124362_130170841	0/0	a0007	45	1	0	0	1	0	0	copy fasta	AIFM1	chrX	130124362	130170841
AIFM2_chr10_70107271_70137825	1/1	a0001	373	358	99	61	141	17	38	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	a0002	373	56	0	7	41	0	8	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	a0003	373	42	1	13	26	0	2	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	a0004	373	8	0	0	8	0	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	a0005	373	2	0	1	0	1	0	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	a0006	373	1	0	0	0	0	1	copy fasta	AIFM2	chr10	70107271	70137825
AIFM2_chr10_70107271_70137825	0/0	a0007	373	1	0	0	0	0	1	copy fasta	AIFM2	chr10	70107271	70137825
AIFM3_chr22_20962255_20986358	1/1	a0001	605	422	82	72	206	17	43	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	a0002	605	15	12	3	0	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	a0003	605	6	0	4	0	1	1	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	a0004	605	2	2	0	0	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	a0005	605	2	0	1	1	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	a0006	605	2	0	0	0	0	2	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	a0007	605	1	1	0	0	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	a0008	605	1	1	0	0	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	a0009	605	1	1	0	0	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	a0010	605	1	1	0	0	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	a0011	605	1	0	1	0	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	a0012	605	1	0	1	0	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIFM3_chr22_20962255_20986358	0/0	a0013	605	1	0	0	1	0	0	copy fasta	AIFM3	chr22	20962255	20986358
AIG1_chr6_143055889_143346058	1/1	a0001	238	204	80	20	82	2	18	copy fasta	AIG1	chr6	143055889	143346058
AIM2_chr1_159057484_159081766	0/0	a0000	0	5	5	0	0	0	0	copy fasta	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	1/1	a0001	343	362	82	57	167	14	40	copy fasta	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	a0002	343	22	4	1	17	0	0	copy fasta	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	a0003	343	1	0	0	1	0	0	copy fasta	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	a0004	343	1	0	0	1	0	0	copy fasta	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	a0005	343	1	0	0	1	0	0	copy fasta	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	a0006	146	1	0	0	1	0	0	copy fasta	AIM2	chr1	159057484	159081766
AIM2_chr1_159057484_159081766	0/0	a0007	343	1	1	0	0	0	0	copy fasta	AIM2	chr1	159057484	159081766
AIMP1_chr4_106311550_106354456	1/1	a0001	312	297	73	56	119	14	33	copy fasta	AIMP1	chr4	106311550	106354456
AIMP1_chr4_106311550_106354456	0/0	a0002	312	76	0	14	57	0	5	copy fasta	AIMP1	chr4	106311550	106354456
AIMP1_chr4_106311550_106354456	0/0	a0003	312	7	7	0	0	0	0	copy fasta	AIMP1	chr4	106311550	106354456
AIMP1_chr4_106311550_106354456	0/0	a0004	312	4	4	0	0	0	0	copy fasta	AIMP1	chr4	106311550	106354456
AIMP2_chr7_6004272_6028834	1/1	a0001	320	425	85	79	198	17	44	copy fasta	AIMP2	chr7	6004272	6028834
AIMP2_chr7_6004272_6028834	0/0	a0002	320	11	10	1	0	0	0	copy fasta	AIMP2	chr7	6004272	6028834
AIMP2_chr7_6004272_6028834	0/0	a0003	320	1	0	0	1	0	0	copy fasta	AIMP2	chr7	6004272	6028834
AIMP2_chr7_6004272_6028834	0/0	a0004	320	1	1	0	0	0	0	copy fasta	AIMP2	chr7	6004272	6028834
AIMP2_chr7_6004272_6028834	0/0	a0005	320	1	0	0	0	0	1	copy fasta	AIMP2	chr7	6004272	6028834
AIMP2_chr7_6004272_6028834	0/0	a0006	320	1	0	0	1	0	0	copy fasta	AIMP2	chr7	6004272	6028834
AIMP2_chr7_6004272_6028834	0/0	a0007	255	1	0	0	0	1	0	copy fasta	AIMP2	chr7	6004272	6028834
AIMP2_chr7_6004272_6028834	0/0	a0008	320	1	0	0	0	0	1	copy fasta	AIMP2	chr7	6004272	6028834
AIPL1_chr17_6418738_6440121	1/1	a0001	384	324	81	63	131	10	37	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	a0002	384	117	5	23	72	8	9	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	a0003	384	4	4	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	a0004	384	3	3	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	a0005	384	1	1	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	a0006	384	1	1	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121