JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GALNT16_chr14_69255158_69359466	0/0	a0008	558	1	0	0	1	0	0	copy fasta	GALNT16	chr14	69255158	69359466
GALNT16_chr14_69255158_69359466	0/0	a0009	558	1	0	0	0	0	1	copy fasta	GALNT16	chr14	69255158	69359466
GALNT17_chr7_71127144_71718599	0/0	a0001	598	75	27	20	12	4	12	copy fasta	GALNT17	chr7	71127144	71718599
GALNT17_chr7_71127144_71718599	0/0	a0002	598	1	1	0	0	0	0	copy fasta	GALNT17	chr7	71127144	71718599
GALNT18_chr11_11265877_11627005	1/1	a0001	607	259	82	42	79	14	40	copy fasta	GALNT18	chr11	11265877	11627005
GALNT18_chr11_11265877_11627005	0/0	a0002	607	1	0	0	1	0	0	copy fasta	GALNT18	chr11	11265877	11627005
GALNT1_chr18_35576740_35716834	1/1	a0001	559	305	94	62	107	12	28	copy fasta	GALNT1	chr18	35576740	35716834
GALNT1_chr18_35576740_35716834	0/0	a0002	559	4	0	0	4	0	0	copy fasta	GALNT1	chr18	35576740	35716834
GALNT1_chr18_35576740_35716834	0/0	a0003	559	1	0	0	1	0	0	copy fasta	GALNT1	chr18	35576740	35716834
GALNT2_chr1_230062238_230287122	1/1	a0001	571	276	89	58	83	9	35	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	a0002	571	45	0	7	33	0	5	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	a0003	571	1	0	0	0	1	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	a0004	451	1	0	1	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT2_chr1_230062238_230287122	0/0	a0005	571	1	1	0	0	0	0	copy fasta	GALNT2	chr1	230062238	230287122
GALNT3_chr2_165742588_165799247	1/1	a0001	633	378	85	66	172	12	41	copy fasta	GALNT3	chr2	165742588	165799247
GALNT3_chr2_165742588_165799247	0/0	a0002	633	4	4	0	0	0	0	copy fasta	GALNT3	chr2	165742588	165799247
GALNT3_chr2_165742588_165799247	0/0	a0003	633	1	0	1	0	0	0	copy fasta	GALNT3	chr2	165742588	165799247
GALNT3_chr2_165742588_165799247	0/0	a0004	633	1	1	0	0	0	0	copy fasta	GALNT3	chr2	165742588	165799247
GALNT3_chr2_165742588_165799247	0/0	a0005	633	1	0	1	0	0	0	copy fasta	GALNT3	chr2	165742588	165799247
GALNT3_chr2_165742588_165799247	0/0	a0006	633	1	0	0	0	0	1	copy fasta	GALNT3	chr2	165742588	165799247
GALNT4_chr12_89514412_89529796	0/1	a0001	578	234	49	39	113	4	28	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	1/0	a0002	578	113	25	24	52	5	6	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	a0003	578	75	19	14	35	2	5	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	a0004	578	4	4	0	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	a0005	578	1	0	0	1	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	a0006	578	1	0	0	0	1	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	a0007	578	1	0	0	1	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	a0008	578	1	0	1	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	a0009	578	1	0	0	0	0	1	copy fasta	GALNT4	chr12	89514412	89529796
GALNT4_chr12_89514412_89529796	0/0	a0010	578	1	1	0	0	0	0	copy fasta	GALNT4	chr12	89514412	89529796
GALNT5_chr2_157252705_157323491	1/1	a0001	940	205	40	47	89	5	22	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	a0002	940	33	28	3	0	0	2	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	a0003	940	25	0	0	25	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	a0004	940	10	10	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	a0005	940	4	4	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	a0006	940	3	1	1	0	1	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	a0007	940	1	0	1	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT5_chr2_157252705_157323491	0/0	a0008	940	1	1	0	0	0	0	copy fasta	GALNT5	chr2	157252705	157323491
GALNT6_chr12_51346252_51396406	1/1	a0001	622	407	78	76	190	14	47	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	a0002	622	9	9	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	a0003	622	3	3	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	a0004	622	1	0	0	1	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	a0005	622	1	0	1	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	a0006	622	1	0	0	0	0	1	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	a0007	622	1	0	1	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	a0008	622	1	0	0	1	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	a0009	622	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	a0010	622	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	a0011	622	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406
GALNT6_chr12_51346252_51396406	0/0	a0012	622	1	1	0	0	0	0	copy fasta	GALNT6	chr12	51346252	51396406