JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GALNT7_chr4_173163811_173328967	1/1	a0001	657	259	85	55	81	10	26	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	a0002	657	2	2	0	0	0	0	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	a0003	657	1	1	0	0	0	0	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	a0004	657	1	1	0	0	0	0	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	a0005	657	1	0	0	1	0	0	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	a0006	657	1	1	0	0	0	0	copy fasta	GALNT7	chr4	173163811	173328967
GALNT7_chr4_173163811_173328967	0/0	a0007	657	1	0	1	0	0	0	copy fasta	GALNT7	chr4	173163811	173328967
GALNT8_chr12_4715400_4777726	1/1	a0001	637	188	37	36	80	6	27	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	a0002	637	97	15	20	49	3	10	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	a0003	637	17	16	0	1	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	a0004	637	6	6	0	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	a0005	637	6	3	2	0	0	1	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	a0006	637	3	0	2	0	0	1	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	a0007	637	3	2	1	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	a0008	637	2	1	1	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	a0009	637	2	2	0	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	a0010	637	2	2	0	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	a0011	637	2	0	1	0	1	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	a0012	637	1	1	0	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	a0013	637	1	1	0	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	a0014	637	1	0	0	1	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	a0015	637	1	1	0	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	a0016	637	1	1	0	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	a0017	430	1	0	0	1	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	a0018	637	1	1	0	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	a0019	637	1	0	0	0	0	1	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	a0020	637	1	1	0	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT8_chr12_4715400_4777726	0/0	a0021	637	1	0	1	0	0	0	copy fasta	GALNT8	chr12	4715400	4777726
GALNT9_chr12_132191372_132334589	0/1	a0001	603	178	43	40	70	6	18	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	a0002	603	1	0	1	0	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	a0003	387	1	0	0	1	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	a0004	603	1	0	0	1	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	a0005	603	1	1	0	0	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNT9_chr12_132191372_132334589	0/0	a0006	603	1	0	1	0	0	0	copy fasta	GALNT9	chr12	132191372	132334589
GALNTL5_chr7_151951446_152024929	0/1	a0001	443	172	41	37	64	7	22	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	a0002	443	81	15	22	33	1	10	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	a0003	443	56	3	8	31	4	10	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	a0004	443	26	0	4	21	0	1	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	1/0	a0005	443	21	20	0	0	0	0	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	a0006	443	8	5	3	0	0	0	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	a0007	443	7	6	1	0	0	0	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	a0008	443	2	2	0	0	0	0	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	a0009	443	2	0	0	2	0	0	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	a0010	443	2	0	0	2	0	0	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	a0011	443	1	1	0	0	0	0	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	a0012	443	1	0	1	0	0	0	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	a0013	443	1	1	0	0	0	0	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	a0014	443	1	0	0	0	0	1	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	a0015	443	1	0	0	0	0	1	copy fasta	GALNTL5	chr7	151951446	152024929
GALNTL5_chr7_151951446_152024929	0/0	a0016	443	1	0	0	0	0	1	copy fasta	GALNTL5	chr7	151951446	152024929