JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GAPVD1_chr9_125256826_125372207	0/0	a0007	1460	1	1	0	0	0	0	copy fasta	GAPVD1	chr9	125256826	125372207
GAR1_chr4_109810762_109829737	1/1	a0001	217	426	96	74	196	14	44	copy fasta	GAR1	chr4	109810762	109829737
GAREM1_chr18_32258522_32475882	1/1	a0001	876	136	60	26	28	9	11	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	a0002	876	18	14	2	0	1	1	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	a0003	876	15	1	2	10	0	2	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	a0004	876	8	0	2	6	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	a0005	876	7	0	1	4	0	2	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	a0006	876	2	2	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	a0007	876	1	0	1	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	a0008	876	1	0	0	1	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	a0009	876	1	0	0	1	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	a0010	876	1	1	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	a0011	876	1	1	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM1_chr18_32258522_32475882	0/0	a0012	876	1	1	0	0	0	0	copy fasta	GAREM1	chr18	32258522	32475882
GAREM2_chr2_26168088_26194663	1/0	a0001	874	283	79	70	94	11	28	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/1	a0002	874	12	2	5	1	1	2	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	a0003	874	2	0	2	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	a0004	874	1	0	0	1	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	a0005	874	1	1	0	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	a0006	874	1	0	1	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	a0007	874	1	0	0	1	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	a0008	874	1	1	0	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	a0009	874	1	0	1	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	a0010	874	1	0	1	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	a0011	874	1	0	0	1	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GAREM2_chr2_26168088_26194663	0/0	a0012	874	1	1	0	0	0	0	copy fasta	GAREM2	chr2	26168088	26194663
GARIN1A_chr7_128667292_128692877	1/0	a0001	300	240	67	48	91	6	27	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/1	a0002	300	89	8	14	55	3	8	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	a0003	300	55	2	9	30	5	9	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	a0004	300	37	13	7	12	2	3	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	a0005	300	3	0	0	0	0	3	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	a0006	300	1	1	0	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	a0007	300	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	a0008	300	1	1	0	0	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1A_chr7_128667292_128692877	0/0	a0009	300	1	0	0	1	0	0	copy fasta	GARIN1A	chr7	128667292	128692877
GARIN1B_chr7_128710391_128736743	1/0	a0001	342	282	82	49	116	10	24	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/1	a0002	342	97	5	17	68	1	5	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/0	a0003	342	68	8	17	23	3	17	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/0	a0004	342	3	3	0	0	0	0	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/0	a0005	342	1	0	1	0	0	0	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN1B_chr7_128710391_128736743	0/0	a0006	342	1	0	0	1	0	0	copy fasta	GARIN1B	chr7	128710391	128736743
GARIN2_chr14_67184440_67228940	1/1	a0001	417	295	75	55	143	3	17	copy fasta	GARIN2	chr14	67184440	67228940
GARIN2_chr14_67184440_67228940	0/0	a0002	416	27	14	8	3	1	1	copy fasta	GARIN2	chr14	67184440	67228940
GARIN2_chr14_67184440_67228940	0/0	a0003	197	5	1	3	0	0	1	copy fasta	GARIN2	chr14	67184440	67228940
GARIN2_chr14_67184440_67228940	0/0	a0004	414	3	3	0	0	0	0	copy fasta	GARIN2	chr14	67184440	67228940
GARIN2_chr14_67184440_67228940	0/0	a0005	417	1	0	0	0	0	1	copy fasta	GARIN2	chr14	67184440	67228940
GARIN2_chr14_67184440_67228940	0/0	a0006	417	1	1	0	0	0	0	copy fasta	GARIN2	chr14	67184440	67228940
GARIN3_chr5_157156846_157171264	1/1	a0001	605	323	60	57	159	9	36	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	a0002	605	43	20	10	6	3	4	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	a0003	605	6	6	0	0	0	0	copy fasta	GARIN3	chr5	157156846	157171264