JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GARIN3_chr5_157156846_157171264	0/0	a0004	605	5	5	0	0	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	a0005	605	5	0	0	5	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	a0006	605	4	0	0	4	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	a0007	605	3	3	0	0	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	a0008	605	1	0	0	1	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	a0009	605	1	0	0	1	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	a0010	605	1	0	1	0	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	a0011	605	1	0	0	1	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	a0012	605	1	1	0	0	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	a0013	605	1	0	0	1	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN3_chr5_157156846_157171264	0/0	a0014	605	1	1	0	0	0	0	copy fasta	GARIN3	chr5	157156846	157171264
GARIN4_chr1_212619474_212631775	0/0	a0001	594	164	19	17	91	12	25	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	1/0	a0002	594	117	27	12	73	1	3	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/1	a0003	594	62	28	12	13	2	6	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	a0004	594	59	1	19	36	0	3	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	a0005	594	18	8	3	0	0	7	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	a0006	594	16	0	11	5	0	0	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	a0007	594	16	11	3	0	0	2	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	a0008	594	5	0	0	5	0	0	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	a0009	594	3	0	1	0	0	2	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	a0010	594	2	0	0	0	2	0	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	a0011	594	2	0	0	2	0	0	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	a0012	594	1	0	0	1	0	0	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	a0013	594	1	0	1	0	0	0	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	a0014	594	1	1	0	0	0	0	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	a0015	594	1	0	1	0	0	0	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	a0016	594	1	1	0	0	0	0	copy fasta	GARIN4	chr1	212619474	212631775
GARIN4_chr1_212619474_212631775	0/0	a0017	594	1	0	0	0	1	0	copy fasta	GARIN4	chr1	212619474	212631775
GARIN5A_chr19_50461788_50481848	1/1	a0001	247	397	82	74	173	18	48	copy fasta	GARIN5A	chr19	50461788	50481848
GARIN5A_chr19_50461788_50481848	0/0	a0002	247	9	9	0	0	0	0	copy fasta	GARIN5A	chr19	50461788	50481848
GARIN5A_chr19_50461788_50481848	0/0	a0003	254	4	0	0	4	0	0	copy fasta	GARIN5A	chr19	50461788	50481848
GARIN5A_chr19_50461788_50481848	0/0	a0004	247	2	2	0	0	0	0	copy fasta	GARIN5A	chr19	50461788	50481848
GARIN5A_chr19_50461788_50481848	0/0	a0005	247	1	0	0	1	0	0	copy fasta	GARIN5A	chr19	50461788	50481848
GARIN5A_chr19_50461788_50481848	0/0	a0006	247	1	1	0	0	0	0	copy fasta	GARIN5A	chr19	50461788	50481848
GARIN5B_chr19_55349908_55368260	0/1	a0001	914	222	30	40	101	13	37	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	1/0	a0002	922	34	6	7	19	0	1	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0003	914	17	14	3	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0004	922	13	6	5	2	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0005	914	7	6	0	1	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0006	914	7	5	2	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0007	914	6	5	1	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0008	924	6	6	0	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0009	914	6	2	1	0	1	2	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0010	914	4	0	1	2	0	1	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0011	914	3	3	0	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0012	914	3	0	3	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0013	914	2	2	0	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0014	922	2	2	0	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0015	922	2	0	2	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0016	914	1	0	0	1	0	0	copy fasta	GARIN5B	chr19	55349908	55368260