JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GARIN5B_chr19_55349908_55368260	0/0	a0017	914	1	0	0	1	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0018	914	1	0	0	1	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0019	914	1	0	0	1	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0020	914	1	1	0	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0021	922	1	0	0	1	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0022	914	1	1	0	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0023	922	1	1	0	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0024	922	1	1	0	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0025	914	1	0	0	1	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0026	924	1	1	0	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0027	914	1	0	1	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0028	914	1	1	0	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0029	924	1	0	1	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0030	914	1	0	0	1	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0031	914	1	0	1	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0032	914	1	0	0	1	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0033	914	1	1	0	0	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0034	914	1	0	0	1	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0035	914	1	0	0	1	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0036	914	1	0	0	0	0	1	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN5B_chr19_55349908_55368260	0/0	a0037	914	1	0	0	1	0	0	copy fasta	GARIN5B	chr19	55349908	55368260
GARIN6_chr12_99642753_99655114	1/0	a0001	241	363	75	64	177	12	34	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/1	a0002	241	86	18	14	37	4	12	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	a0003	241	2	0	0	2	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	a0004	241	1	1	0	0	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	a0005	241	1	1	0	0	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	a0006	241	1	1	0	0	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	a0007	241	1	1	0	0	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARIN6_chr12_99642753_99655114	0/0	a0008	241	1	1	0	0	0	0	copy fasta	GARIN6	chr12	99642753	99655114
GARNL3_chr9_127259774_127398660	1/1	a0001	1013	294	74	47	130	16	25	copy fasta	GARNL3	chr9	127259774	127398660
GARNL3_chr9_127259774_127398660	0/0	a0002	1013	1	0	0	0	0	1	copy fasta	GARNL3	chr9	127259774	127398660
GARNL3_chr9_127259774_127398660	0/0	a0003	1013	1	1	0	0	0	0	copy fasta	GARNL3	chr9	127259774	127398660
GARNL3_chr9_127259774_127398660	0/0	a0004	1013	1	1	0	0	0	0	copy fasta	GARNL3	chr9	127259774	127398660
GARNL3_chr9_127259774_127398660	0/0	a0005	1013	1	0	0	1	0	0	copy fasta	GARNL3	chr9	127259774	127398660
GARNL3_chr9_127259774_127398660	0/0	a0006	1013	1	0	0	1	0	0	copy fasta	GARNL3	chr9	127259774	127398660
GARNL3_chr9_127259774_127398660	0/0	a0007	1013	1	0	1	0	0	0	copy fasta	GARNL3	chr9	127259774	127398660
GARRE1_chr19_34249554_34360566	1/1	a0001	1070	313	88	58	123	12	30	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	a0002	1066	3	0	2	0	0	1	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	a0003	1070	2	0	0	0	0	2	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	a0004	1070	1	0	0	1	0	0	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	a0005	1070	1	0	0	0	0	1	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	a0006	1070	1	0	0	0	0	1	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	a0007	1070	1	0	1	0	0	0	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	a0008	1070	1	0	1	0	0	0	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	a0009	1070	1	0	0	0	0	1	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	a0010	1070	1	0	0	0	0	1	copy fasta	GARRE1	chr19	34249554	34360566
GARRE1_chr19_34249554_34360566	0/0	a0011	1070	1	0	0	0	0	1	copy fasta	GARRE1	chr19	34249554	34360566
GARS1_chr7_30589878_30639033	0/1	a0001	739	233	42	41	110	10	29	copy fasta	GARS1	chr7	30589878	30639033
GARS1_chr7_30589878_30639033	1/0	a0002	739	158	43	26	69	6	13	copy fasta	GARS1	chr7	30589878	30639033
GARS1_chr7_30589878_30639033	0/0	a0003	739	5	5	0	0	0	0	copy fasta	GARS1	chr7	30589878	30639033