JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GARS1_chr7_30589878_30639033	0/0	a0004	739	1	0	1	0	0	0	copy fasta	GARS1	chr7	30589878	30639033
GARS1_chr7_30589878_30639033	0/0	a0005	739	1	0	0	1	0	0	copy fasta	GARS1	chr7	30589878	30639033
GARS1_chr7_30589878_30639033	0/0	a0006	739	1	1	0	0	0	0	copy fasta	GARS1	chr7	30589878	30639033
GARS1_chr7_30589878_30639033	0/0	a0007	739	1	1	0	0	0	0	copy fasta	GARS1	chr7	30589878	30639033
GARS1_chr7_30589878_30639033	0/0	a0008	739	1	0	0	1	0	0	copy fasta	GARS1	chr7	30589878	30639033
GARS1_chr7_30589878_30639033	0/0	a0009	739	1	0	0	1	0	0	copy fasta	GARS1	chr7	30589878	30639033
GART_chr21_33498933_33547117	0/0	a0001	1010	269	79	46	112	9	23	copy fasta	GART	chr21	33498933	33547117
GART_chr21_33498933_33547117	0/0	a0002	1010	57	0	11	35	3	8	copy fasta	GART	chr21	33498933	33547117
GART_chr21_33498933_33547117	1/1	a0003	1010	42	5	10	11	4	10	copy fasta	GART	chr21	33498933	33547117
GART_chr21_33498933_33547117	0/0	a0004	1010	6	5	1	0	0	0	copy fasta	GART	chr21	33498933	33547117
GART_chr21_33498933_33547117	0/0	a0005	1010	3	2	1	0	0	0	copy fasta	GART	chr21	33498933	33547117
GART_chr21_33498933_33547117	0/0	a0006	1010	3	3	0	0	0	0	copy fasta	GART	chr21	33498933	33547117
GART_chr21_33498933_33547117	0/0	a0007	1010	1	0	0	0	0	1	copy fasta	GART	chr21	33498933	33547117
GART_chr21_33498933_33547117	0/0	a0008	1010	1	0	1	0	0	0	copy fasta	GART	chr21	33498933	33547117
GART_chr21_33498933_33547117	0/0	a0009	1010	1	1	0	0	0	0	copy fasta	GART	chr21	33498933	33547117
GART_chr21_33498933_33547117	0/0	a0010	1010	1	1	0	0	0	0	copy fasta	GART	chr21	33498933	33547117
GAS1_chr9_86939362_86952506	1/1	a0001	345	439	94	78	210	18	37	copy fasta	GAS1	chr9	86939362	86952506
GAS1_chr9_86939362_86952506	0/0	a0002	345	1	0	0	0	0	1	copy fasta	GAS1	chr9	86939362	86952506
GAS2L1_chr22_29301650_29317787	1/1	a0001	681	404	81	66	193	14	48	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	a0002	681	6	6	0	0	0	0	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	a0003	681	5	4	0	1	0	0	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	a0004	681	4	0	2	0	2	0	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	a0005	681	2	2	0	0	0	0	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	a0006	681	2	0	2	0	0	0	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L1_chr22_29301650_29317787	0/0	a0007	681	1	1	0	0	0	0	copy fasta	GAS2L1	chr22	29301650	29317787
GAS2L2_chr17_35739511_35758239	1/1	a0001	880	231	46	45	96	11	31	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0002	880	55	20	4	27	2	2	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0003	880	49	9	4	33	0	3	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0004	880	38	3	11	19	1	4	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0005	880	11	7	1	2	1	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0006	880	8	0	5	2	1	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0007	880	4	0	0	3	0	1	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0008	880	4	0	4	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0009	880	4	1	2	1	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0010	880	3	3	0	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0011	880	2	0	0	0	0	2	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0012	880	2	0	0	2	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0013	880	2	0	2	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0014	880	2	2	0	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0015	880	2	0	0	2	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0016	880	2	2	0	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0017	880	2	0	0	2	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0018	880	1	0	0	1	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0019	880	1	0	0	1	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0020	880	1	0	0	1	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0021	880	1	0	0	1	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0022	880	1	0	0	1	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0023	880	1	0	0	0	0	1	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0024	880	1	1	0	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0025	880	1	0	0	1	0	0	copy fasta	GAS2L2	chr17	35739511	35758239