JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GAS2L2_chr17_35739511_35758239	0/0	a0026	880	1	0	0	1	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0027	880	1	0	1	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0028	880	1	0	0	1	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0029	880	1	0	0	1	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0030	880	1	1	0	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0031	880	1	1	0	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L2_chr17_35739511_35758239	0/0	a0032	880	1	0	1	0	0	0	copy fasta	GAS2L2	chr17	35739511	35758239
GAS2L3_chr12_100568684_100633288	1/1	a0001	694	391	76	67	185	16	45	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	a0002	694	4	4	0	0	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	a0003	694	2	0	0	1	0	1	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	a0004	694	1	1	0	0	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	a0005	705	1	0	0	1	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	a0006	694	1	0	0	1	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	a0007	694	1	1	0	0	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2L3_chr12_100568684_100633288	0/0	a0008	694	1	0	1	0	0	0	copy fasta	GAS2L3	chr12	100568684	100633288
GAS2_chr11_22661611_22818001	1/1	a0001	313	265	77	46	114	6	20	copy fasta	GAS2	chr11	22661611	22818001
GAS2_chr11_22661611_22818001	0/0	a0002	313	7	7	0	0	0	0	copy fasta	GAS2	chr11	22661611	22818001
GAS6_chr13_113815549_113869076	1/0	a0001	678	134	28	30	49	10	16	copy fasta	GAS6	chr13	113815549	113869076
GAS6_chr13_113815549_113869076	0/0	a0002	678	4	3	1	0	0	0	copy fasta	GAS6	chr13	113815549	113869076
GAS6_chr13_113815549_113869076	0/0	a0003	678	1	0	1	0	0	0	copy fasta	GAS6	chr13	113815549	113869076
GAS6_chr13_113815549_113869076	0/0	a0004	678	1	1	0	0	0	0	copy fasta	GAS6	chr13	113815549	113869076
GAS6_chr13_113815549_113869076	0/0	a0005	678	1	1	0	0	0	0	copy fasta	GAS6	chr13	113815549	113869076
GAS6_chr13_113815549_113869076	0/0	a0006	678	1	0	0	1	0	0	copy fasta	GAS6	chr13	113815549	113869076
GAS6_chr13_113815549_113869076	0/0	a0007	678	1	1	0	0	0	0	copy fasta	GAS6	chr13	113815549	113869076
GAS7_chr17_9905606_10203606	1/1	a0001	476	216	81	52	50	10	21	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	a0002	476	1	1	0	0	0	0	copy fasta	GAS7	chr17	9905606	10203606
GAS7_chr17_9905606_10203606	0/0	a0003	476	1	0	0	0	0	1	copy fasta	GAS7	chr17	9905606	10203606
GAS8_chr16_90017680_90049960	1/1	a0001	478	350	87	72	136	16	37	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	a0002	478	17	0	1	14	0	2	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	a0003	478	5	0	3	1	0	1	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	a0004	478	3	0	0	3	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	a0005	478	3	3	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	a0006	478	1	1	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	a0007	478	1	1	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	a0008	478	1	0	0	0	0	1	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	a0009	478	1	1	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	a0010	478	1	0	1	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	a0011	478	1	0	1	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	a0012	478	1	1	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	a0013	478	1	1	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	a0014	478	1	0	0	0	0	1	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	a0015	478	1	0	0	0	0	1	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	a0016	478	1	0	0	0	0	1	copy fasta	GAS8	chr16	90017680	90049960
GAS8_chr16_90017680_90049960	0/0	a0017	478	1	1	0	0	0	0	copy fasta	GAS8	chr16	90017680	90049960
GASK1A_chr3_42974311_43062715	0/0	a0001	575	122	25	24	66	3	4	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	1/0	a0002	575	106	37	21	26	4	17	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/1	a0003	575	51	5	7	23	2	13	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	a0004	575	43	13	13	8	3	6	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	a0005	575	7	4	1	0	0	2	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	a0006	575	2	2	0	0	0	0	copy fasta	GASK1A	chr3	42974311	43062715