JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GASK1A_chr3_42974311_43062715	0/0	a0007	575	2	2	0	0	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	a0008	575	1	1	0	0	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	a0009	575	1	1	0	0	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	a0010	575	1	1	0	0	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	a0011	575	1	0	0	1	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	a0012	575	1	0	0	0	0	1	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	a0013	575	1	0	0	1	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	a0014	575	1	0	0	0	0	1	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	a0015	575	1	1	0	0	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1A_chr3_42974311_43062715	0/0	a0016	553	1	0	0	1	0	0	copy fasta	GASK1A	chr3	42974311	43062715
GASK1B_chr4_158119474_158178025	1/1	a0001	519	288	88	54	110	6	28	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	a0002	519	2	0	0	2	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	a0003	519	1	0	1	0	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GASK1B_chr4_158119474_158178025	0/0	a0004	519	1	0	1	0	0	0	copy fasta	GASK1B	chr4	158119474	158178025
GAST_chr17_41707331_41720969	1/1	a0001	101	368	71	74	161	18	42	copy fasta	GAST	chr17	41707331	41720969
GAST_chr17_41707331_41720969	0/0	a0002	101	19	19	0	0	0	0	copy fasta	GAST	chr17	41707331	41720969
GAST_chr17_41707331_41720969	0/0	a0003	101	9	0	0	9	0	0	copy fasta	GAST	chr17	41707331	41720969
GATA1_chrX_48781590_48799311	1/1	a0001	413	263	74	48	105	9	25	copy fasta	GATA1	chrX	48781590	48799311
GATA1_chrX_48781590_48799311	0/0	a0002	413	1	0	0	0	0	1	copy fasta	GATA1	chrX	48781590	48799311
GATA1_chrX_48781590_48799311	0/0	a0003	413	1	1	0	0	0	0	copy fasta	GATA1	chrX	48781590	48799311
GATA1_chrX_48781590_48799311	0/0	a0004	290	1	0	0	1	0	0	copy fasta	GATA1	chrX	48781590	48799311
GATA1_chrX_48781590_48799311	0/0	a0005	413	1	0	0	1	0	0	copy fasta	GATA1	chrX	48781590	48799311
GATA1_chrX_48781590_48799311	0/0	a0006	413	1	1	0	0	0	0	copy fasta	GATA1	chrX	48781590	48799311
GATA2_chr3_128474427_128493530	1/1	a0001	480	305	82	62	112	13	34	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	a0002	480	113	14	17	69	3	10	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	a0003	480	11	0	0	10	0	1	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	a0004	480	1	0	0	1	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	a0005	480	1	0	1	0	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	a0006	480	1	0	0	0	0	1	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	a0007	480	1	0	0	1	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128493530	0/0	a0008	480	1	0	0	1	0	0	copy fasta	GATA2	chr3	128474427	128493530
GATA2_chr3_128474427_128498201	1/1	a0001	480	306	81	63	115	11	34	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	a0002	480	108	15	16	64	3	10	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	a0003	480	11	0	0	10	0	1	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	a0004	480	1	0	0	1	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	a0005	480	1	0	1	0	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	a0006	480	1	0	0	0	0	1	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	a0007	480	1	0	0	1	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA2_chr3_128474427_128498201	0/0	a0008	480	1	0	0	1	0	0	copy fasta	GATA2	chr3	128474427	128498201
GATA3_chr10_8049688_8080198	1/1	a0001	444	367	92	84	141	16	32	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	a0002	444	1	0	0	0	0	1	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	a0003	444	1	0	0	0	0	1	copy fasta	GATA3	chr10	8049688	8080198
GATA3_chr10_8049688_8080198	0/0	a0004	444	1	0	0	1	0	0	copy fasta	GATA3	chr10	8049688	8080198
GATA4_chr8_11699202_11765002	1/1	a0001	443	312	94	59	115	7	35	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	a0002	443	13	1	9	0	3	0	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	a0003	443	6	3	0	0	0	3	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	a0004	443	3	0	0	0	0	3	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	a0005	443	2	0	0	0	0	2	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	a0006	443	2	0	0	0	0	2	copy fasta	GATA4	chr8	11699202	11765002
GATA4_chr8_11699202_11765002	0/0	a0007	443	1	0	0	1	0	0	copy fasta	GATA4	chr8	11699202	11765002