Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AIPL1_chr17_6418738_6440121	0/0	a0007	384	1	0	0	1	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	a0008	384	1	1	0	0	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	a0009	384	1	0	0	1	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIPL1_chr17_6418738_6440121	0/0	a0010	384	1	0	0	1	0	0	copy fasta	AIPL1	chr17	6418738	6440121
AIP_chr11_67478026_67496103	0/1	a0001	330	283	32	66	142	10	32	copy fasta	AIP	chr11	67478026	67496103
AIP_chr11_67478026_67496103	1/0	a0002	330	57	54	2	0	0	0	copy fasta	AIP	chr11	67478026	67496103
AIP_chr11_67478026_67496103	0/0	a0003	330	1	1	0	0	0	0	copy fasta	AIP	chr11	67478026	67496103
AIP_chr11_67478026_67496103	0/0	a0004	330	1	1	0	0	0	0	copy fasta	AIP	chr11	67478026	67496103
AIRE_chr21_44280876_44303648	1/1	a0001	545	301	58	70	120	13	38	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	a0002	545	111	27	10	65	1	8	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	a0003	545	6	6	0	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	a0004	545	2	1	1	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	a0005	545	1	0	0	1	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	a0006	545	1	1	0	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	a0007	545	1	1	0	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	a0008	486	1	0	1	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	a0009	545	1	0	0	1	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	a0010	210	1	0	0	1	0	0	copy fasta	AIRE	chr21	44280876	44303648
AJAP1_chr1_4649609_4797534	1/0	a0001	411	206	68	31	71	8	27	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/1	a0002	411	104	9	36	36	8	14	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	a0003	411	10	0	0	10	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	a0004	411	7	6	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	a0005	411	2	2	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	a0006	411	1	0	0	0	0	1	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	a0007	411	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	a0008	411	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	a0009	411	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	a0010	411	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJM1_chr9_136837478_136853801	1/1	a0001	976	350	86	75	132	14	41	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	a0002	976	4	0	0	4	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	a0003	976	2	1	0	0	0	1	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	a0004	976	2	0	0	2	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	a0005	976	2	1	1	0	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	a0006	976	1	0	0	1	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	a0007	976	1	0	0	1	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	a0008	976	1	0	0	1	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	a0009	976	1	0	0	1	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJUBA_chr14_22966177_22987551	1/1	a0001	538	329	99	70	102	14	42	copy fasta	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	a0002	538	2	0	2	0	0	0	copy fasta	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	a0003	538	2	0	0	0	2	0	copy fasta	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	a0004	538	1	1	0	0	0	0	copy fasta	AJUBA	chr14	22966177	22987551
AK1_chr9_127861486_127882675	1/1	a0001	194	407	94	74	181	17	39	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	a0002	194	12	0	2	0	1	9	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	a0003	194	5	3	0	1	0	1	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	a0004	194	1	0	0	0	0	1	copy fasta	AK1	chr9	127861486	127882675
AK1_chr9_127861486_127882675	0/0	a0005	194	1	1	0	0	0	0	copy fasta	AK1	chr9	127861486	127882675
AK2_chr1_33002986_33041883	1/1	a0001	239	346	95	54	153	16	26	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	a0002	239	2	0	2	0	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	a0003	239	1	0	0	1	0	0	copy fasta	AK2	chr1	33002986	33041883
AK2_chr1_33002986_33041883	0/0	a0004	239	1	1	0	0	0	0	copy fasta	AK2	chr1	33002986	33041883