JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GATA4_chr8_11699202_11765002	0/0	a0008	443	1	0	0	0	0	1	copy fasta	GATA4	chr8	11699202	11765002
GATA5_chr20_62458497_62480995	1/1	a0001	397	304	70	60	132	10	30	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	a0002	397	60	10	13	16	6	15	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	a0003	184	5	0	4	1	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	a0004	397	5	5	0	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	a0005	397	3	0	3	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	a0006	366	1	1	0	0	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	a0007	184	1	0	0	1	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	a0008	397	1	0	0	0	0	1	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	a0009	397	1	0	0	1	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA5_chr20_62458497_62480995	0/0	a0010	187	1	0	0	1	0	0	copy fasta	GATA5	chr20	62458497	62480995
GATA6_chr18_22164589_22207528	1/1	a0001	595	250	78	36	92	10	32	copy fasta	GATA6	chr18	22164589	22207528
GATA6_chr18_22164589_22207528	0/0	a0002	595	23	10	3	10	0	0	copy fasta	GATA6	chr18	22164589	22207528
GATA6_chr18_22164589_22207528	0/0	a0003	595	11	7	4	0	0	0	copy fasta	GATA6	chr18	22164589	22207528
GATA6_chr18_22164589_22207528	0/0	a0004	595	1	1	0	0	0	0	copy fasta	GATA6	chr18	22164589	22207528
GATA6_chr18_22164589_22207528	0/0	a0005	595	1	0	1	0	0	0	copy fasta	GATA6	chr18	22164589	22207528
GATAD1_chr7_92442482_92465075	1/1	a0001	269	290	73	46	127	11	31	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	a0002	269	34	8	6	10	5	5	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	a0003	269	2	0	0	2	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	a0004	264	1	0	0	1	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	a0005	269	1	1	0	0	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	a0006	269	1	0	1	0	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD1_chr7_92442482_92465075	0/0	a0007	269	1	0	1	0	0	0	copy fasta	GATAD1	chr7	92442482	92465075
GATAD2A_chr19_19400675_19513932	1/1	a0001	634	293	83	52	102	12	42	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	a0002	634	3	3	0	0	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	a0003	319	1	0	0	1	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2A_chr19_19400675_19513932	0/0	a0004	634	1	0	0	1	0	0	copy fasta	GATAD2A	chr19	19400675	19513932
GATAD2B_chr1_153799725_153927972	0/1	a0001	593	345	86	60	152	8	38	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	a0002	593	2	2	0	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATAD2B_chr1_153799725_153927972	0/0	a0003	593	2	0	2	0	0	0	copy fasta	GATAD2B	chr1	153799725	153927972
GATB_chr4_151665504_151766007	1/1	a0001	557	260	60	48	114	8	28	copy fasta	GATB	chr4	151665504	151766007
GATB_chr4_151665504_151766007	0/0	a0002	557	47	22	3	20	2	0	copy fasta	GATB	chr4	151665504	151766007
GATB_chr4_151665504_151766007	0/0	a0003	557	4	4	0	0	0	0	copy fasta	GATB	chr4	151665504	151766007
GATB_chr4_151665504_151766007	0/0	a0004	557	2	2	0	0	0	0	copy fasta	GATB	chr4	151665504	151766007
GATB_chr4_151665504_151766007	0/0	a0005	557	2	2	0	0	0	0	copy fasta	GATB	chr4	151665504	151766007
GATB_chr4_151665504_151766007	0/0	a0006	557	2	2	0	0	0	0	copy fasta	GATB	chr4	151665504	151766007
GATB_chr4_151665504_151766007	0/0	a0007	557	1	0	0	1	0	0	copy fasta	GATB	chr4	151665504	151766007
GATB_chr4_151665504_151766007	0/0	a0008	557	1	0	1	0	0	0	copy fasta	GATB	chr4	151665504	151766007
GATB_chr4_151665504_151766007	0/0	a0009	557	1	0	0	1	0	0	copy fasta	GATB	chr4	151665504	151766007
GATC_chr12_120441444_120468749	1/1	a0001	136	399	92	71	180	16	38	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	a0002	136	8	0	1	1	2	4	copy fasta	GATC	chr12	120441444	120468749
GATC_chr12_120441444_120468749	0/0	a0003	136	1	0	0	1	0	0	copy fasta	GATC	chr12	120441444	120468749
GATD1_chr11_762222_782487	1/1	a0001	220	414	93	81	178	18	42	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	a0002	220	12	0	0	12	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	a0003	220	1	0	1	0	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	a0004	220	1	0	0	1	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	a0005	220	1	1	0	0	0	0	copy fasta	GATD1	chr11	762222	782487
GATD1_chr11_762222_782487	0/0	a0006	220	1	0	0	1	0	0	copy fasta	GATD1	chr11	762222	782487
GATD3_chr21_44128683_44150711	0/0	a0001	268	34	24	5	5	0	0	copy fasta	GATD3	chr21	44128683	44150711
GATD3_chr21_44128683_44150711	0/0	a0002	268	20	14	3	3	0	0	copy fasta	GATD3	chr21	44128683	44150711