JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GBGT1_chr9_133147948_133168914	0/0	a0006	347	3	0	0	3	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	a0007	347	3	3	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	a0008	347	3	3	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	a0009	347	2	0	0	2	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	a0010	120	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	a0011	347	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	a0012	347	1	0	0	1	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	a0013	347	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	a0014	347	1	0	0	1	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	a0015	347	1	0	0	1	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	a0016	347	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	a0017	347	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	a0018	120	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	a0019	347	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	a0020	347	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	a0021	347	1	0	0	1	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	a0022	347	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	a0023	347	1	0	0	1	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	a0024	347	1	0	0	0	1	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	a0025	347	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	a0026	347	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	a0027	347	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	a0028	120	1	1	0	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	a0029	347	1	0	0	0	0	1	copy fasta	GBGT1	chr9	133147948	133168914
GBGT1_chr9_133147948_133168914	0/0	a0030	347	1	0	1	0	0	0	copy fasta	GBGT1	chr9	133147948	133168914
GBP1_chr1_89047319_89070208	1/0	a0001	592	142	20	14	96	4	7	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	a0002	592	134	54	22	40	6	12	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	a0003	592	123	21	21	58	7	16	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	a0004	592	12	0	11	0	1	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	a0005	592	5	0	0	5	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	a0006	592	4	0	4	0	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/1	a0007	592	2	0	0	0	0	1	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	a0008	592	2	2	0	0	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	a0009	592	2	0	2	0	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	a0010	592	1	1	0	0	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	a0011	152	1	0	0	1	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	a0012	592	1	0	0	1	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP1_chr1_89047319_89070208	0/0	a0013	592	1	0	0	1	0	0	copy fasta	GBP1	chr1	89047319	89070208
GBP2_chr1_89101132_89131114	0/1	a0001	591	255	35	42	140	9	28	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	1/0	a0002	591	133	51	30	30	9	12	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	a0003	591	20	0	1	17	0	2	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	a0004	591	2	2	0	0	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	a0005	591	1	0	0	1	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	a0006	591	1	0	1	0	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	a0007	591	1	1	0	0	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP2_chr1_89101132_89131114	0/0	a0008	591	1	1	0	0	0	0	copy fasta	GBP2	chr1	89101132	89131114
GBP3_chr1_89001680_89027866	1/0	a0001	595	185	40	28	105	4	7	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	a0002	290	80	4	20	39	5	12	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/1	a0003	595	70	16	11	22	6	14	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	a0004	595	59	2	9	33	3	12	copy fasta	GBP3	chr1	89001680	89027866