JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GBP3_chr1_89001680_89027866	0/0	a0005	595	14	14	0	0	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	a0006	595	11	11	0	0	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	a0007	595	3	3	0	0	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	a0008	595	2	0	0	2	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	a0009	595	2	0	2	0	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	a0010	595	2	1	0	1	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	a0011	595	1	0	0	0	0	1	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	a0012	595	1	0	1	0	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	a0013	595	1	1	0	0	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	a0014	595	1	1	0	0	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	a0015	595	1	1	0	0	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	a0016	290	1	0	1	0	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	a0017	595	1	0	0	1	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP3_chr1_89001680_89027866	0/0	a0018	290	1	0	0	1	0	0	copy fasta	GBP3	chr1	89001680	89027866
GBP4_chr1_89176144_89203942	1/0	a0001	640	239	52	46	110	9	21	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/1	a0002	640	118	9	20	58	7	23	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	a0003	640	30	29	1	0	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	a0004	640	8	0	0	8	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	a0005	640	3	3	0	0	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	a0006	640	1	1	0	0	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	a0007	640	1	1	0	0	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	a0008	640	1	1	0	0	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP4_chr1_89176144_89203942	0/0	a0009	640	1	0	1	0	0	0	copy fasta	GBP4	chr1	89176144	89203942
GBP5_chr1_89251189_89277860	1/1	a0001	586	381	72	65	182	17	43	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	a0002	586	27	0	3	23	0	1	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	a0003	586	8	8	0	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	a0004	586	6	5	1	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	a0005	586	3	3	0	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	a0006	586	2	2	0	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	a0007	586	2	2	0	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	a0008	586	1	0	1	0	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	a0009	586	1	0	0	0	1	0	copy fasta	GBP5	chr1	89251189	89277860
GBP5_chr1_89251189_89277860	0/0	a0010	586	1	0	0	1	0	0	copy fasta	GBP5	chr1	89251189	89277860
GBP6_chr1_89359059_89393160	0/0	a0001	633	255	70	38	110	10	27	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	a0002	633	74	1	16	52	1	4	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	1/0	a0003	633	70	5	10	46	1	7	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	a0004	633	16	1	10	0	2	3	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/1	a0005	633	8	1	3	0	2	1	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	a0006	633	5	5	0	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	a0007	633	5	5	0	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	a0008	633	4	0	0	4	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	a0009	633	4	0	0	4	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	a0010	633	4	4	0	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	a0011	633	2	0	0	2	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	a0012	633	2	2	0	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	a0013	633	1	0	1	0	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	a0014	633	1	0	0	1	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP6_chr1_89359059_89393160	0/0	a0015	633	1	0	0	1	0	0	copy fasta	GBP6	chr1	89359059	89393160
GBP7_chr1_89126742_89181003	0/1	a0001	638	258	54	43	125	9	26	copy fasta	GBP7	chr1	89126742	89181003
GBP7_chr1_89126742_89181003	1/0	a0002	638	99	17	24	38	7	12	copy fasta	GBP7	chr1	89126742	89181003