JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GBP7_chr1_89126742_89181003	0/0	a0003	638	6	6	0	0	0	0	copy fasta	GBP7	chr1	89126742	89181003
GBP7_chr1_89126742_89181003	0/0	a0004	638	4	4	0	0	0	0	copy fasta	GBP7	chr1	89126742	89181003
GBP7_chr1_89126742_89181003	0/0	a0005	638	3	3	0	0	0	0	copy fasta	GBP7	chr1	89126742	89181003
GBP7_chr1_89126742_89181003	0/0	a0006	638	3	2	1	0	0	0	copy fasta	GBP7	chr1	89126742	89181003
GBP7_chr1_89126742_89181003	0/0	a0007	638	1	1	0	0	0	0	copy fasta	GBP7	chr1	89126742	89181003
GBP7_chr1_89126742_89181003	0/0	a0008	638	1	1	0	0	0	0	copy fasta	GBP7	chr1	89126742	89181003
GBP7_chr1_89126742_89181003	0/0	a0009	638	1	0	0	1	0	0	copy fasta	GBP7	chr1	89126742	89181003
GBX1_chr7_151143009_151172694	1/1	a0001	363	386	81	69	185	16	33	copy fasta	GBX1	chr7	151143009	151172694
GBX1_chr7_151143009_151172694	0/0	a0002	363	7	6	0	1	0	0	copy fasta	GBX1	chr7	151143009	151172694
GBX1_chr7_151143009_151172694	0/0	a0003	363	2	0	0	2	0	0	copy fasta	GBX1	chr7	151143009	151172694
GBX1_chr7_151143009_151172694	0/0	a0004	363	2	2	0	0	0	0	copy fasta	GBX1	chr7	151143009	151172694
GBX1_chr7_151143009_151172694	0/0	a0005	363	1	0	0	0	0	1	copy fasta	GBX1	chr7	151143009	151172694
GBX1_chr7_151143009_151172694	0/0	a0006	363	1	1	0	0	0	0	copy fasta	GBX1	chr7	151143009	151172694
GBX1_chr7_151143009_151172694	0/0	a0007	363	1	0	1	0	0	0	copy fasta	GBX1	chr7	151143009	151172694
GBX2_chr2_236160236_236173386	1/1	a0001	348	339	96	45	130	18	48	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	a0002	348	2	2	0	0	0	0	copy fasta	GBX2	chr2	236160236	236173386
GBX2_chr2_236160236_236173386	0/0	a0003	348	1	0	1	0	0	0	copy fasta	GBX2	chr2	236160236	236173386
GCAT_chr22_37802934_37821897	0/1	a0001	419	199	53	34	85	11	15	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	1/0	a0002	419	172	21	36	81	7	26	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	a0003	419	4	4	0	0	0	0	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	a0004	419	3	3	0	0	0	0	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	a0005	419	2	2	0	0	0	0	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	a0006	419	2	2	0	0	0	0	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	a0007	419	1	1	0	0	0	0	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	a0008	419	1	0	0	1	0	0	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	a0009	419	1	0	0	1	0	0	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	a0010	419	1	0	0	0	0	1	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	a0011	419	1	0	0	1	0	0	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	a0012	419	1	0	1	0	0	0	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	a0013	419	1	0	1	0	0	0	copy fasta	GCAT	chr22	37802934	37821897
GCAT_chr22_37802934_37821897	0/0	a0014	419	1	0	0	1	0	0	copy fasta	GCAT	chr22	37802934	37821897
GCA_chr2_162339132_162368123	1/1	a0001	217	350	85	61	156	11	35	copy fasta	GCA	chr2	162339132	162368123
GCA_chr2_162339132_162368123	0/0	a0002	217	13	3	6	0	3	1	copy fasta	GCA	chr2	162339132	162368123
GCA_chr2_162339132_162368123	0/0	a0003	217	2	0	0	0	2	0	copy fasta	GCA	chr2	162339132	162368123
GCA_chr2_162339132_162368123	0/0	a0004	217	1	0	1	0	0	0	copy fasta	GCA	chr2	162339132	162368123
GCC1_chr7_127575628_127590596	1/1	a0001	775	364	82	76	147	12	45	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	a0002	775	8	8	0	0	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	a0003	775	6	3	0	3	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	a0004	775	3	1	0	0	2	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	a0005	775	2	0	2	0	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	a0006	775	2	2	0	0	0	0	copy fasta	GCC1	chr7	127575628	127590596
GCC1_chr7_127575628_127590596	0/0	a0007	775	1	0	0	0	0	1	copy fasta	GCC1	chr7	127575628	127590596
GCC2_chr2_108444206_108514415	0/1	a0001	1684	252	75	47	71	16	42	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	a0002	1684	7	0	0	7	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	a0003	1684	7	7	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	a0004	1684	3	3	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	a0005	1684	2	1	0	1	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	1/0	a0006	1684	1	0	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	a0007	1684	1	1	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415
GCC2_chr2_108444206_108514415	0/0	a0008	1684	1	1	0	0	0	0	copy fasta	GCC2	chr2	108444206	108514415