JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GCKR_chr2_27491839_27528684	0/0	a0007	625	2	0	2	0	0	0	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	a0008	625	1	0	0	1	0	0	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	a0009	226	1	0	0	1	0	0	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	a0010	539	1	0	1	0	0	0	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	a0011	625	1	0	0	1	0	0	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	a0012	625	1	0	0	1	0	0	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	a0013	625	1	0	0	1	0	0	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	a0014	625	1	1	0	0	0	0	copy fasta	GCKR	chr2	27491839	27528684
GCKR_chr2_27491839_27528684	0/0	a0015	625	1	1	0	0	0	0	copy fasta	GCKR	chr2	27491839	27528684
GCK_chr7_44139275_44194439	1/1	a0001	465	389	87	64	180	18	38	copy fasta	GCK	chr7	44139275	44194439
GCK_chr7_44139275_44194439	0/0	a0002	465	3	3	0	0	0	0	copy fasta	GCK	chr7	44139275	44194439
GCLC_chr6_53492341_53550101	1/1	a0001	637	414	91	70	195	14	42	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	a0002	637	5	0	0	5	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	a0003	637	3	3	0	0	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	a0004	637	3	0	0	3	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLC_chr6_53492341_53550101	0/0	a0005	637	1	0	0	1	0	0	copy fasta	GCLC	chr6	53492341	53550101
GCLM_chr1_93880199_93914430	1/1	a0001	274	381	94	71	162	14	38	copy fasta	GCLM	chr1	93880199	93914430
GCLM_chr1_93880199_93914430	0/0	a0002	274	1	0	1	0	0	0	copy fasta	GCLM	chr1	93880199	93914430
GCM1_chr6_53121961_53153841	1/1	a0001	436	410	90	80	194	12	32	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	a0002	436	1	1	0	0	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM1_chr6_53121961_53153841	0/0	a0003	436	1	1	0	0	0	0	copy fasta	GCM1	chr6	53121961	53153841
GCM2_chr6_10868223_10887041	1/1	a0001	506	399	76	66	199	16	40	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	a0002	506	13	13	0	0	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	a0003	506	4	4	0	0	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	a0004	506	2	0	0	0	2	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	a0005	506	1	0	0	1	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	a0006	506	1	1	0	0	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	a0007	506	1	1	0	0	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	a0008	506	1	1	0	0	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	a0009	506	1	1	0	0	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	a0010	506	1	1	0	0	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	a0011	506	1	1	0	0	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCM2_chr6_10868223_10887041	0/0	a0012	506	1	1	0	0	0	0	copy fasta	GCM2	chr6	10868223	10887041
GCN1_chr12_120122202_120199715	1/1	a0001	2671	287	78	50	118	8	31	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	a0002	2671	5	0	0	5	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	a0003	2671	4	0	0	4	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	a0004	2671	3	3	0	0	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	a0005	2671	2	1	0	1	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	a0006	2671	1	1	0	0	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	a0007	2671	1	0	0	1	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	a0008	2671	1	0	0	0	0	1	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	a0009	2671	1	0	0	1	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	a0010	2671	1	0	0	0	1	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	a0011	2671	1	0	0	0	1	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	a0012	2671	1	1	0	0	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	a0013	2671	1	1	0	0	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	a0014	2671	1	0	0	1	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	a0015	2671	1	1	0	0	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCN1_chr12_120122202_120199715	0/0	a0016	2671	1	0	0	1	0	0	copy fasta	GCN1	chr12	120122202	120199715
GCNA_chrX_71573437_71618583	1/1	a0001	691	240	56	40	105	9	28	copy fasta	GCNA	chrX	71573437	71618583