JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GCSH_chr16_81076945_81101395	0/0	a0006	173	1	0	1	0	0	0	copy fasta	GCSH	chr16	81076945	81101395
GC_chr4_71736697_71789079	0/0	a0001	474	191	75	17	91	0	8	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/1	a0002	474	101	10	21	48	7	14	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/0	a0003	474	81	9	14	47	1	10	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/0	a0004	474	4	0	0	4	0	0	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/0	a0005	474	3	0	0	3	0	0	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/0	a0006	474	2	0	0	2	0	0	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	1/0	a0007	474	2	1	0	0	0	0	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/0	a0008	474	1	1	0	0	0	0	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/0	a0009	474	1	1	0	0	0	0	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/0	a0010	474	1	0	0	1	0	0	copy fasta	GC	chr4	71736697	71789079
GC_chr4_71736697_71789079	0/0	a0011	474	1	1	0	0	0	0	copy fasta	GC	chr4	71736697	71789079
GDAP1L1_chr20_44242308_44285947	1/1	a0001	367	386	84	55	185	16	44	copy fasta	GDAP1L1	chr20	44242308	44285947
GDAP1L1_chr20_44242308_44285947	0/0	a0002	367	3	3	0	0	0	0	copy fasta	GDAP1L1	chr20	44242308	44285947
GDAP1L1_chr20_44242308_44285947	0/0	a0003	367	1	0	0	1	0	0	copy fasta	GDAP1L1	chr20	44242308	44285947
GDAP1L1_chr20_44242308_44285947	0/0	a0004	367	1	0	1	0	0	0	copy fasta	GDAP1L1	chr20	44242308	44285947
GDAP1L1_chr20_44242308_44285947	0/0	a0005	367	1	1	0	0	0	0	copy fasta	GDAP1L1	chr20	44242308	44285947
GDAP1_chr8_74345403_74371876	1/1	a0001	358	429	89	80	206	14	38	copy fasta	GDAP1	chr8	74345403	74371876
GDAP1_chr8_74345403_74371876	0/0	a0002	358	1	1	0	0	0	0	copy fasta	GDAP1	chr8	74345403	74371876
GDAP2_chr1_117858485_117934621	1/1	a0001	497	356	79	56	163	12	44	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	a0002	497	5	5	0	0	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	a0003	497	2	0	0	2	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDAP2_chr1_117858485_117934621	0/0	a0004	497	1	0	0	1	0	0	copy fasta	GDAP2	chr1	117858485	117934621
GDA_chr9_72144440_72257224	1/1	a0001	454	308	79	61	124	12	30	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	a0002	454	2	2	0	0	0	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	a0003	454	1	0	1	0	0	0	copy fasta	GDA	chr9	72144440	72257224
GDA_chr9_72144440_72257224	0/0	a0004	454	1	1	0	0	0	0	copy fasta	GDA	chr9	72144440	72257224
GDE1_chr16_19496693_19527098	1/1	a0001	331	382	90	68	173	8	41	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	a0002	331	13	0	0	13	0	0	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	a0003	331	2	2	0	0	0	0	copy fasta	GDE1	chr16	19496693	19527098
GDE1_chr16_19496693_19527098	0/0	a0004	331	1	0	0	0	0	1	copy fasta	GDE1	chr16	19496693	19527098
GDF10_chr10_47295197_47318577	1/1	a0001	478	381	80	68	181	12	38	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	a0002	478	7	7	0	0	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	a0003	478	5	4	1	0	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	a0004	478	2	2	0	0	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	a0005	478	1	0	1	0	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	a0006	478	1	1	0	0	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF10_chr10_47295197_47318577	0/0	a0007	478	1	0	0	1	0	0	copy fasta	GDF10	chr10	47295197	47318577
GDF11_chr12_55738122_55762264	1/1	a0001	407	353	87	56	165	8	35	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	a0002	408	12	0	0	11	0	1	copy fasta	GDF11	chr12	55738122	55762264
GDF11_chr12_55738122_55762264	0/0	a0003	411	1	1	0	0	0	0	copy fasta	GDF11	chr12	55738122	55762264
GDF15_chr19_18381158_18394176	1/0	a0001	308	128	12	16	77	7	15	copy fasta	GDF15	chr19	18381158	18394176
GDF15_chr19_18381158_18394176	0/0	a0002	308	119	16	26	65	4	8	copy fasta	GDF15	chr19	18381158	18394176
GDF15_chr19_18381158_18394176	0/0	a0003	308	87	9	14	44	5	15	copy fasta	GDF15	chr19	18381158	18394176
GDF15_chr19_18381158_18394176	0/1	a0004	308	82	56	15	0	2	8	copy fasta	GDF15	chr19	18381158	18394176
GDF15_chr19_18381158_18394176	0/0	a0005	308	5	3	2	0	0	0	copy fasta	GDF15	chr19	18381158	18394176
GDF15_chr19_18381158_18394176	0/0	a0006	308	2	2	0	0	0	0	copy fasta	GDF15	chr19	18381158	18394176
GDF15_chr19_18381158_18394176	0/0	a0007	308	1	0	1	0	0	0	copy fasta	GDF15	chr19	18381158	18394176
GDF1_chr19_18863545_18901158	1/0	a0001	372	271	84	31	111	10	34	copy fasta	GDF1	chr19	18863545	18901158
GDF1_chr19_18863545_18901158	0/1	a0002	372	78	1	26	38	3	9	copy fasta	GDF1	chr19	18863545	18901158