Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AK3_chr9_4704556_4746202	1/1	a0001	227	452	89	83	214	16	48	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	a0002	227	7	6	1	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	a0003	227	1	0	0	1	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	a0004	227	1	0	0	1	0	0	copy fasta	AK3	chr9	4704556	4746202
AK3_chr9_4704556_4746202	0/0	a0005	227	1	1	0	0	0	0	copy fasta	AK3	chr9	4704556	4746202
AK4_chr1_65143203_65237145	1/1	a0001	223	216	39	53	99	8	15	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	a0002	223	82	49	5	25	2	1	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	a0003	223	1	0	0	1	0	0	copy fasta	AK4	chr1	65143203	65237145
AK4_chr1_65143203_65237145	0/0	a0004	223	1	0	0	1	0	0	copy fasta	AK4	chr1	65143203	65237145
AK5_chr1_77277019_77564966	0/1	a0001	563	171	25	36	83	11	15	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	1/0	a0002	562	108	43	10	44	1	9	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	a0003	562	4	4	0	0	0	0	copy fasta	AK5	chr1	77277019	77564966
AK5_chr1_77277019_77564966	0/0	a0004	563	1	0	0	1	0	0	copy fasta	AK5	chr1	77277019	77564966
AK6_chr5_69345984_69374520	0/1	a0001	172	421	96	72	198	14	40	copy fasta	AK6	chr5	69345984	69374520
AK7_chr14_96387128_96494427	0/1	a0001	723	205	55	41	69	14	25	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	a0002	723	64	17	11	27	0	9	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	1/0	a0003	723	22	2	6	6	2	5	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	a0004	723	12	10	2	0	0	0	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	a0005	723	3	0	0	1	0	2	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	a0006	723	3	0	0	3	0	0	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	a0007	723	1	1	0	0	0	0	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	a0008	723	1	0	1	0	0	0	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	a0009	723	1	1	0	0	0	0	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	a0010	723	1	0	0	1	0	0	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	a0011	723	1	0	0	1	0	0	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	a0012	723	1	0	0	0	0	1	copy fasta	AK7	chr14	96387128	96494427
AK7_chr14_96387128_96494427	0/0	a0013	723	1	0	1	0	0	0	copy fasta	AK7	chr14	96387128	96494427
AK8_chr9_132720578_132883284	1/1	a0001	479	227	53	45	93	8	26	copy fasta	AK8	chr9	132720578	132883284
AK8_chr9_132720578_132883284	0/0	a0002	479	30	28	2	0	0	0	copy fasta	AK8	chr9	132720578	132883284
AK8_chr9_132720578_132883284	0/0	a0003	479	2	2	0	0	0	0	copy fasta	AK8	chr9	132720578	132883284
AK8_chr9_132720578_132883284	0/0	a0004	479	1	1	0	0	0	0	copy fasta	AK8	chr9	132720578	132883284
AK8_chr9_132720578_132883284	0/0	a0005	479	1	0	0	1	0	0	copy fasta	AK8	chr9	132720578	132883284
AK8_chr9_132720578_132883284	0/0	a0006	479	1	1	0	0	0	0	copy fasta	AK8	chr9	132720578	132883284
AK8_chr9_132720578_132883284	0/0	a0007	479	1	0	1	0	0	0	copy fasta	AK8	chr9	132720578	132883284
AK8_chr9_132720578_132883284	0/0	a0008	479	1	1	0	0	0	0	copy fasta	AK8	chr9	132720578	132883284
AK8_chr9_132720578_132883284	0/0	a0009	479	1	1	0	0	0	0	copy fasta	AK8	chr9	132720578	132883284
AK8_chr9_132720578_132883284	0/0	a0010	479	1	1	0	0	0	0	copy fasta	AK8	chr9	132720578	132883284
AK9_chr6_109487855_109696202	1/1	a0001	1911	94	48	19	17	3	5	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	a0002	1911	87	6	17	47	5	12	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	a0003	1910	58	9	9	30	0	10	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	a0004	1910	57	5	11	32	5	4	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	a0005	1911	36	5	6	21	1	3	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	a0006	1910	16	3	5	4	2	2	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	a0007	1911	5	5	0	0	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	a0008	1911	3	3	0	0	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	a0009	1911	3	0	1	2	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	a0010	1911	3	0	0	3	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	a0011	1911	3	3	0	0	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	a0012	1910	3	3	0	0	0	0	copy fasta	AK9	chr6	109487855	109696202
AK9_chr6_109487855_109696202	0/0	a0013	1910	1	0	0	1	0	0	copy fasta	AK9	chr6	109487855	109696202