JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GDF7_chr2_20662144_20684243	0/0	a0014	449	1	0	0	0	0	1	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	a0015	453	1	1	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	a0016	453	1	1	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	a0017	151	1	0	0	1	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF7_chr2_20662144_20684243	0/0	a0018	453	1	1	0	0	0	0	copy fasta	GDF7	chr2	20662144	20684243
GDF9_chr5_132856185_132871469	1/1	a0001	454	451	96	77	216	16	44	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	a0002	454	5	0	0	5	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	a0003	454	2	0	0	2	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	a0004	454	1	1	0	0	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	a0005	454	1	0	0	1	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	a0006	454	1	1	0	0	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	a0007	454	1	0	1	0	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	a0008	454	1	0	0	1	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDF9_chr5_132856185_132871469	0/0	a0009	454	1	0	0	1	0	0	copy fasta	GDF9	chr5	132856185	132871469
GDI1_chrX_154432154_154448467	1/1	a0001	447	278	76	56	105	7	32	copy fasta	GDI1	chrX	154432154	154448467
GDI1_chrX_154432154_154448467	0/0	a0002	279	1	0	0	1	0	0	copy fasta	GDI1	chrX	154432154	154448467
GDI1_chrX_154432154_154448467	0/0	a0003	349	1	0	0	1	0	0	copy fasta	GDI1	chrX	154432154	154448467
GDI1_chrX_154432154_154448467	0/0	a0004	240	1	0	0	1	0	0	copy fasta	GDI1	chrX	154432154	154448467
GDI1_chrX_154432154_154448467	0/0	a0005	74	1	0	0	1	0	0	copy fasta	GDI1	chrX	154432154	154448467
GDI1_chrX_154432154_154448467	0/0	a0006	75	1	0	0	1	0	0	copy fasta	GDI1	chrX	154432154	154448467
GDI2_chr10_5760223_5818434	1/1	a0001	445	396	78	66	194	16	40	copy fasta	GDI2	chr10	5760223	5818434
GDI2_chr10_5760223_5818434	0/0	a0002	445	1	1	0	0	0	0	copy fasta	GDI2	chr10	5760223	5818434
GDI2_chr10_5760223_5818434	0/0	a0003	445	1	1	0	0	0	0	copy fasta	GDI2	chr10	5760223	5818434
GDNF_chr5_37807677_37845041	1/1	a0001	211	428	96	71	206	15	38	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	a0002	211	1	0	0	0	1	0	copy fasta	GDNF	chr5	37807677	37845041
GDNF_chr5_37807677_37845041	0/0	a0003	211	1	0	1	0	0	0	copy fasta	GDNF	chr5	37807677	37845041
GDPD1_chr17_59215511_59280970	1/1	a0001	314	310	83	52	129	8	36	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	a0002	314	1	0	0	1	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD1_chr17_59215511_59280970	0/0	a0003	314	1	1	0	0	0	0	copy fasta	GDPD1	chr17	59215511	59280970
GDPD2_chrX_70418314_70438381	1/1	a0001	539	310	65	54	145	13	31	copy fasta	GDPD2	chrX	70418314	70438381
GDPD2_chrX_70418314_70438381	0/0	a0002	539	3	1	2	0	0	0	copy fasta	GDPD2	chrX	70418314	70438381
GDPD2_chrX_70418314_70438381	0/0	a0003	51	1	0	0	1	0	0	copy fasta	GDPD2	chrX	70418314	70438381
GDPD2_chrX_70418314_70438381	0/0	a0004	539	1	0	1	0	0	0	copy fasta	GDPD2	chrX	70418314	70438381
GDPD2_chrX_70418314_70438381	0/0	a0005	539	1	0	0	1	0	0	copy fasta	GDPD2	chrX	70418314	70438381
GDPD2_chrX_70418314_70438381	0/0	a0006	280	1	0	0	1	0	0	copy fasta	GDPD2	chrX	70418314	70438381
GDPD2_chrX_70418314_70438381	0/0	a0007	366	1	0	0	1	0	0	copy fasta	GDPD2	chrX	70418314	70438381
GDPD3_chr16_30099810_30118537	1/1	a0001	318	380	90	70	161	18	39	copy fasta	GDPD3	chr16	30099810	30118537
GDPD3_chr16_30099810_30118537	0/0	a0002	318	4	0	0	4	0	0	copy fasta	GDPD3	chr16	30099810	30118537
GDPD3_chr16_30099810_30118537	0/0	a0003	318	3	0	0	0	0	3	copy fasta	GDPD3	chr16	30099810	30118537
GDPD3_chr16_30099810_30118537	0/0	a0004	318	1	0	0	1	0	0	copy fasta	GDPD3	chr16	30099810	30118537
GDPD3_chr16_30099810_30118537	0/0	a0005	318	1	1	0	0	0	0	copy fasta	GDPD3	chr16	30099810	30118537
GDPD3_chr16_30099810_30118537	0/0	a0006	318	1	1	0	0	0	0	copy fasta	GDPD3	chr16	30099810	30118537
GDPD4_chr11_77211558_77306686	1/1	a0001	520	164	30	33	83	3	13	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	a0002	520	96	41	9	42	1	3	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	a0003	403	78	3	14	48	3	10	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	a0004	403	3	2	1	0	0	0	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	a0005	520	3	3	0	0	0	0	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	a0006	403	2	0	1	0	1	0	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	a0007	520	1	1	0	0	0	0	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	a0008	520	1	1	0	0	0	0	copy fasta	GDPD4	chr11	77211558	77306686