JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GDPD4_chr11_77211558_77306686	0/0	a0009	520	1	1	0	0	0	0	copy fasta	GDPD4	chr11	77211558	77306686
GDPD4_chr11_77211558_77306686	0/0	a0010	403	1	0	0	1	0	0	copy fasta	GDPD4	chr11	77211558	77306686
GDPD5_chr11_75429640_75530941	0/0	a0001	605	225	52	46	100	8	19	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	1/1	a0002	605	93	35	18	21	6	11	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	a0003	605	1	1	0	0	0	0	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	a0004	605	1	1	0	0	0	0	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	a0005	605	1	1	0	0	0	0	copy fasta	GDPD5	chr11	75429640	75530941
GDPD5_chr11_75429640_75530941	0/0	a0006	605	1	0	0	1	0	0	copy fasta	GDPD5	chr11	75429640	75530941
GDPGP1_chr15_90229209_90250811	0/0	a0001	385	287	36	58	156	7	30	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/1	a0002	385	68	1	11	44	3	8	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	a0003	385	38	21	11	0	4	2	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	a0004	385	15	13	2	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	a0005	385	11	11	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	a0006	385	10	10	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	a0007	385	2	0	0	2	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	a0008	385	2	1	1	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	a0009	385	1	1	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	a0010	385	1	0	0	0	0	1	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	a0011	385	1	0	0	0	0	1	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	0/0	a0012	385	1	0	1	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GDPGP1_chr15_90229209_90250811	1/0	a0013	385	1	0	0	0	0	0	copy fasta	GDPGP1	chr15	90229209	90250811
GEMIN2_chr14_39109323_39141973	1/1	a0001	269	422	91	76	195	16	42	copy fasta	GEMIN2	chr14	39109323	39141973
GEMIN2_chr14_39109323_39141973	0/0	a0002	269	1	1	0	0	0	0	copy fasta	GEMIN2	chr14	39109323	39141973
GEMIN2_chr14_39109323_39141973	0/0	a0003	269	1	0	0	1	0	0	copy fasta	GEMIN2	chr14	39109323	39141973
GEMIN4_chr17_739421_757264	0/0	a0001	1058	160	36	19	84	8	13	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0002	1058	68	9	10	39	0	10	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/1	a0003	1058	66	4	21	29	2	9	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	1/0	a0004	1058	52	0	14	24	5	8	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0005	1058	15	14	1	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0006	1058	11	0	1	10	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0007	1058	9	8	1	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0008	1058	9	1	4	0	0	4	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0009	1058	4	0	0	4	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0010	1058	4	4	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0011	1058	3	0	0	3	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0012	1058	3	3	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0013	1058	2	2	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0014	1058	2	2	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0015	1058	2	2	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0016	1058	2	0	0	0	2	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0017	1058	2	0	0	0	0	2	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0018	1058	2	2	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0019	1058	1	1	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0020	1058	1	0	0	1	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0021	1058	1	1	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0022	1058	1	0	0	0	0	1	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0023	1058	1	1	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0024	1058	1	1	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0025	1058	1	0	1	0	0	0	copy fasta	GEMIN4	chr17	739421	757264
GEMIN4_chr17_739421_757264	0/0	a0026	1058	1	1	0	0	0	0	copy fasta	GEMIN4	chr17	739421	757264