JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GEN1_chr2_17749138_17793946	0/0	a0005	908	16	0	1	15	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	a0006	908	13	13	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	a0007	908	9	9	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	a0008	908	7	6	1	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	a0009	908	7	0	4	0	0	3	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	a0010	908	6	6	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	a0011	908	3	0	0	0	0	3	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	a0012	908	1	1	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	a0013	908	1	0	1	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	a0014	908	1	1	0	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	a0015	908	1	0	1	0	0	0	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	a0016	908	1	0	0	0	0	1	copy fasta	GEN1	chr2	17749138	17793946
GEN1_chr2_17749138_17793946	0/0	a0017	908	1	0	0	0	0	1	copy fasta	GEN1	chr2	17749138	17793946
GET1_chr21_39375326_39402889	1/1	a0001	174	333	81	68	128	18	36	copy fasta	GET1	chr21	39375326	39402889
GET1_chr21_39375326_39402889	0/0	a0002	174	5	5	0	0	0	0	copy fasta	GET1	chr21	39375326	39402889
GET3_chr19_12732497_12753323	1/1	a0001	348	284	94	68	84	12	24	copy fasta	GET3	chr19	12732497	12753323
GET3_chr19_12732497_12753323	0/0	a0002	348	2	2	0	0	0	0	copy fasta	GET3	chr19	12732497	12753323
GET4_chr7_871554_901436	1/1	a0001	327	380	90	73	163	14	38	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	a0002	327	3	0	0	3	0	0	copy fasta	GET4	chr7	871554	901436
GET4_chr7_871554_901436	0/0	a0003	327	1	0	1	0	0	0	copy fasta	GET4	chr7	871554	901436
GFAP_chr17_44898159_44920500	1/1	a0001	432	377	93	69	157	12	44	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	a0002	432	41	2	6	26	3	4	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	a0003	432	2	2	0	0	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	a0004	432	1	1	0	0	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	a0005	432	1	0	0	1	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	a0006	432	1	0	0	0	1	0	copy fasta	GFAP	chr17	44898159	44920500
GFAP_chr17_44898159_44920500	0/0	a0007	432	1	0	1	0	0	0	copy fasta	GFAP	chr17	44898159	44920500
GFER_chr16_1979193_1992749	1/0	a0001	205	414	92	68	190	16	47	copy fasta	GFER	chr16	1979193	1992749
GFER_chr16_1979193_1992749	0/1	a0002	205	10	0	6	0	2	1	copy fasta	GFER	chr16	1979193	1992749
GFER_chr16_1979193_1992749	0/0	a0003	144	1	0	0	1	0	0	copy fasta	GFER	chr16	1979193	1992749
GFER_chr16_1979193_1992749	0/0	a0004	205	1	0	0	1	0	0	copy fasta	GFER	chr16	1979193	1992749
GFI1B_chr9_132973694_132996687	1/1	a0001	330	457	89	84	221	16	45	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	a0002	330	4	4	0	0	0	0	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	a0003	330	3	3	0	0	0	0	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	a0004	330	2	0	0	2	0	0	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	a0005	330	2	0	0	0	0	2	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	a0006	330	2	0	0	0	0	2	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	a0007	330	1	0	0	0	0	1	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	a0008	330	1	1	0	0	0	0	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	a0009	330	1	1	0	0	0	0	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	a0010	330	1	0	0	1	0	0	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	a0011	330	1	1	0	0	0	0	copy fasta	GFI1B	chr9	132973694	132996687
GFI1B_chr9_132973694_132996687	0/0	a0012	330	1	1	0	0	0	0	copy fasta	GFI1B	chr9	132973694	132996687
GFI1_chr1_92468043_92491925	1/1	a0001	422	332	87	73	122	15	33	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	a0002	422	3	1	2	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	a0003	422	3	3	0	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	a0004	429	1	1	0	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	a0005	422	1	0	0	0	1	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	a0006	422	1	0	1	0	0	0	copy fasta	GFI1	chr1	92468043	92491925
GFI1_chr1_92468043_92491925	0/0	a0007	422	1	0	0	0	0	1	copy fasta	GFI1	chr1	92468043	92491925