JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GGT7_chr20_34839720_34877856	0/0	a0003	662	3	3	0	0	0	0	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	a0004	662	2	0	2	0	0	0	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	a0005	662	1	0	0	1	0	0	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	a0006	662	1	0	0	1	0	0	copy fasta	GGT7	chr20	34839720	34877856
GGT7_chr20_34839720_34877856	0/0	a0007	662	1	0	0	1	0	0	copy fasta	GGT7	chr20	34839720	34877856
GGTA1_chr9_121450040_121504844	1/1	a0001	100	330	76	61	150	11	30	copy fasta	GGTA1	chr9	121450040	121504844
GGTA1_chr9_121450040_121504844	0/0	a0002	100	6	2	3	0	1	0	copy fasta	GGTA1	chr9	121450040	121504844
GGTA1_chr9_121450040_121504844	0/0	a0003	100	2	0	2	0	0	0	copy fasta	GGTA1	chr9	121450040	121504844
GGTLC1_chr20_23980053_23993779	1/1	a0001	225	426	95	77	196	12	44	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC1_chr20_23980053_23993779	0/0	a0002	225	4	1	3	0	0	0	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC1_chr20_23980053_23993779	0/0	a0003	225	3	1	0	0	2	0	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC1_chr20_23980053_23993779	0/0	a0004	225	2	2	0	0	0	0	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC1_chr20_23980053_23993779	0/0	a0005	225	1	1	0	0	0	0	copy fasta	GGTLC1	chr20	23980053	23993779
GGTLC2_chr22_22639614_22652898	0/1	a0001	218	295	65	69	126	6	28	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	a0002	218	61	6	5	31	5	14	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	a0003	218	18	15	3	0	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	1/0	a0004	218	13	1	2	0	2	7	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	a0005	218	6	0	0	6	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	a0006	218	4	4	0	0	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	a0007	218	3	0	0	3	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	a0008	218	2	0	1	0	1	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	a0009	218	2	0	0	2	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	a0010	218	2	0	0	2	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	a0011	218	1	0	0	0	0	1	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	a0012	218	1	0	0	1	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	a0013	218	1	1	0	0	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	a0014	218	1	0	0	1	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	a0015	218	1	1	0	0	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC2_chr22_22639614_22652898	0/0	a0016	218	1	1	0	0	0	0	copy fasta	GGTLC2	chr22	22639614	22652898
GGTLC3_chr22_18511344_18523161	0/0	a0001	225	26	5	7	13	0	1	copy fasta	GGTLC3	chr22	18511344	18523161
GGTLC3_chr22_18511344_18523161	0/0	a0002	225	3	0	0	3	0	0	copy fasta	GGTLC3	chr22	18511344	18523161
GGTLC3_chr22_18511344_18523161	0/0	a0003	225	2	1	1	0	0	0	copy fasta	GGTLC3	chr22	18511344	18523161
GGTLC3_chr22_18511344_18523161	0/0	a0004	58	1	0	0	0	0	1	copy fasta	GGTLC3	chr22	18511344	18523161
GGTLC3_chr22_18511344_18523161	0/0	a0005	225	1	1	0	0	0	0	copy fasta	GGTLC3	chr22	18511344	18523161
GGTLC3_chr22_18511344_18523161	0/0	a0006	225	1	1	0	0	0	0	copy fasta	GGTLC3	chr22	18511344	18523161
GH1_chr17_63912203_63923839	0/0	a0000	0	1	0	0	1	0	0	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	1/1	a0001	217	393	83	82	170	17	39	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	a0002	217	16	9	1	5	0	1	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	a0003	217	4	4	0	0	0	0	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	a0004	217	2	0	0	2	0	0	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	a0005	217	1	1	0	0	0	0	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	a0006	217	1	0	0	0	1	0	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	a0007	217	1	0	1	0	0	0	copy fasta	GH1	chr17	63912203	63923839
GH1_chr17_63912203_63923839	0/0	a0008	217	1	1	0	0	0	0	copy fasta	GH1	chr17	63912203	63923839
GH2_chr17_63875215_63886944	1/1	a0001	217	425	92	75	192	16	48	copy fasta	GH2	chr17	63875215	63886944
GH2_chr17_63875215_63886944	0/0	a0002	217	1	0	1	0	0	0	copy fasta	GH2	chr17	63875215	63886944
GHDC_chr17_42184087_42199494	1/1	a0001	530	349	76	52	160	15	44	copy fasta	GHDC	chr17	42184087	42199494
GHDC_chr17_42184087_42199494	0/0	a0002	530	12	11	1	0	0	0	copy fasta	GHDC	chr17	42184087	42199494
GHDC_chr17_42184087_42199494	0/0	a0003	530	6	0	5	0	1	0	copy fasta	GHDC	chr17	42184087	42199494
GHDC_chr17_42184087_42199494	0/0	a0004	530	1	1	0	0	0	0	copy fasta	GHDC	chr17	42184087	42199494