JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GINS1_chr20_25402673_25453563	1/1	a0001	196	295	83	49	127	6	28	copy fasta	GINS1	chr20	25402673	25453563
GINS1_chr20_25402673_25453563	0/0	a0002	196	64	11	27	2	10	14	copy fasta	GINS1	chr20	25402673	25453563
GINS1_chr20_25402673_25453563	0/0	a0003	190	1	0	0	1	0	0	copy fasta	GINS1	chr20	25402673	25453563
GINS2_chr16_85671198_85693954	1/1	a0001	185	466	99	82	215	18	50	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	a0002	185	3	0	0	3	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS2_chr16_85671198_85693954	0/0	a0003	185	1	1	0	0	0	0	copy fasta	GINS2	chr16	85671198	85693954
GINS3_chr16_58387471_58411147	1/1	a0001	216	432	94	74	198	16	48	copy fasta	GINS3	chr16	58387471	58411147
GINS3_chr16_58387471_58411147	0/0	a0002	216	2	2	0	0	0	0	copy fasta	GINS3	chr16	58387471	58411147
GINS4_chr8_41524261_41550030	1/1	a0001	223	423	90	76	191	18	46	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	a0002	223	2	0	0	2	0	0	copy fasta	GINS4	chr8	41524261	41550030
GINS4_chr8_41524261_41550030	0/0	a0003	177	1	0	0	1	0	0	copy fasta	GINS4	chr8	41524261	41550030
GIPC1_chr19_14472762_14501127	1/1	a0001	333	411	88	64	197	16	44	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	a0002	333	26	9	14	1	2	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	a0003	333	1	0	0	1	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	a0004	333	1	0	0	0	0	1	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	a0005	333	1	1	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	a0006	333	1	1	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	a0007	333	1	1	0	0	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	a0008	333	1	0	0	0	0	1	copy fasta	GIPC1	chr19	14472762	14501127
GIPC1_chr19_14472762_14501127	0/0	a0009	333	1	0	0	1	0	0	copy fasta	GIPC1	chr19	14472762	14501127
GIPC2_chr1_78040966_78143444	1/1	a0001	315	190	71	47	39	9	22	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	a0002	315	113	18	16	67	5	7	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	a0003	315	25	0	0	18	0	7	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	a0004	315	1	1	0	0	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	a0005	315	1	0	0	1	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	a0006	315	1	0	1	0	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC2_chr1_78040966_78143444	0/0	a0007	315	1	0	0	1	0	0	copy fasta	GIPC2	chr1	78040966	78143444
GIPC3_chr19_3580478_3598541	1/1	a0001	312	423	94	78	184	16	49	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	a0002	312	2	0	0	2	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	a0003	312	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	a0004	312	1	0	0	0	0	1	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	a0005	312	1	1	0	0	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	a0006	312	1	0	0	1	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPC3_chr19_3580478_3598541	0/0	a0007	312	1	0	0	1	0	0	copy fasta	GIPC3	chr19	3580478	3598541
GIPR_chr19_45663221_45688722	1/0	a0001	466	323	76	70	123	12	41	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/1	a0002	466	74	10	9	47	4	3	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	a0003	466	5	0	0	5	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	a0004	466	3	0	0	3	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	a0005	466	2	0	0	2	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	a0006	466	2	0	0	2	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	a0007	466	2	2	0	0	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	a0008	466	2	0	0	2	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	a0009	466	1	0	1	0	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	a0010	466	1	1	0	0	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIPR_chr19_45663221_45688722	0/0	a0011	466	1	1	0	0	0	0	copy fasta	GIPR	chr19	45663221	45688722
GIP_chr17_48953554_48973596	1/1	a0001	153	220	86	43	60	8	21	copy fasta	GIP	chr17	48953554	48973596
GIP_chr17_48953554_48973596	0/0	a0002	153	182	2	39	114	8	19	copy fasta	GIP	chr17	48953554	48973596
GIP_chr17_48953554_48973596	0/0	a0003	153	1	0	0	1	0	0	copy fasta	GIP	chr17	48953554	48973596
GIP_chr17_48953554_48973596	0/0	a0004	153	1	1	0	0	0	0	copy fasta	GIP	chr17	48953554	48973596
GIP_chr17_48953554_48973596	0/0	a0005	153	1	1	0	0	0	0	copy fasta	GIP	chr17	48953554	48973596