JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GIP_chr17_48953554_48973596	0/0	a0006	153	1	0	0	1	0	0	copy fasta	GIP	chr17	48953554	48973596
GIT1_chr17_29568475_29594648	1/1	a0001	761	399	94	80	160	18	45	copy fasta	GIT1	chr17	29568475	29594648
GIT1_chr17_29568475_29594648	0/0	a0002	761	1	0	0	0	0	1	copy fasta	GIT1	chr17	29568475	29594648
GIT2_chr12_109924804_110001368	1/1	a0001	759	202	77	57	45	8	13	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	a0002	759	30	7	0	21	0	2	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	a0003	759	3	3	0	0	0	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	a0004	759	3	0	0	3	0	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	a0005	759	1	0	1	0	0	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	a0006	759	1	0	0	1	0	0	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	a0007	759	1	0	0	0	0	1	copy fasta	GIT2	chr12	109924804	110001368
GIT2_chr12_109924804_110001368	0/0	a0008	759	1	1	0	0	0	0	copy fasta	GIT2	chr12	109924804	110001368
GJA10_chr6_89889469_89901120	1/1	a0001	543	376	85	70	159	18	42	copy fasta	GJA10	chr6	89889469	89901120
GJA10_chr6_89889469_89901120	0/0	a0002	543	2	2	0	0	0	0	copy fasta	GJA10	chr6	89889469	89901120
GJA10_chr6_89889469_89901120	0/0	a0003	492	2	0	2	0	0	0	copy fasta	GJA10	chr6	89889469	89901120
GJA10_chr6_89889469_89901120	0/0	a0004	543	1	0	1	0	0	0	copy fasta	GJA10	chr6	89889469	89901120
GJA10_chr6_89889469_89901120	0/0	a0005	543	1	0	0	0	0	1	copy fasta	GJA10	chr6	89889469	89901120
GJA10_chr6_89889469_89901120	0/0	a0006	543	1	1	0	0	0	0	copy fasta	GJA10	chr6	89889469	89901120
GJA10_chr6_89889469_89901120	0/0	a0007	543	1	0	0	0	0	1	copy fasta	GJA10	chr6	89889469	89901120
GJA10_chr6_89889469_89901120	0/0	a0008	543	1	0	0	1	0	0	copy fasta	GJA10	chr6	89889469	89901120
GJA10_chr6_89889469_89901120	0/0	a0009	543	1	0	1	0	0	0	copy fasta	GJA10	chr6	89889469	89901120
GJA1_chr6_121430646_121454727	1/1	a0001	382	414	96	70	189	14	43	copy fasta	GJA1	chr6	121430646	121454727
GJA1_chr6_121430646_121454727	0/0	a0002	382	1	0	0	0	0	1	copy fasta	GJA1	chr6	121430646	121454727
GJA1_chr6_121430646_121454727	0/0	a0003	382	1	0	0	1	0	0	copy fasta	GJA1	chr6	121430646	121454727
GJA3_chr13_20133255_20166052	0/1	a0001	435	369	75	80	147	18	48	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	1/0	a0002	435	22	21	0	0	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA3_chr13_20133255_20166052	0/0	a0003	435	1	0	0	1	0	0	copy fasta	GJA3	chr13	20133255	20166052
GJA4_chr1_34787999_34800747	1/1	a0001	333	241	31	33	135	9	31	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	a0002	333	142	57	23	46	7	9	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	a0003	333	14	0	11	0	2	1	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	a0004	333	8	7	1	0	0	0	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	a0005	333	3	0	0	3	0	0	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	a0006	333	2	2	0	0	0	0	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	a0007	230	1	0	1	0	0	0	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	a0008	333	1	0	0	0	0	1	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	a0009	333	1	0	1	0	0	0	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	a0010	333	1	0	0	1	0	0	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	a0011	333	1	1	0	0	0	0	copy fasta	GJA4	chr1	34787999	34800747
GJA4_chr1_34787999_34800747	0/0	a0012	333	1	0	0	1	0	0	copy fasta	GJA4	chr1	34787999	34800747
GJA5_chr1_147751199_147765602	1/1	a0001	358	449	94	76	217	16	44	copy fasta	GJA5	chr1	147751199	147765602
GJA5_chr1_147751199_147765602	0/0	a0002	358	1	0	0	1	0	0	copy fasta	GJA5	chr1	147751199	147765602
GJA8_chr1_147897795_147914269	1/1	a0001	433	469	93	84	225	16	49	copy fasta	GJA8	chr1	147897795	147914269
GJA8_chr1_147897795_147914269	0/0	a0002	433	1	0	0	1	0	0	copy fasta	GJA8	chr1	147897795	147914269
GJA8_chr1_147897795_147914269	0/0	a0003	433	1	0	0	0	0	1	copy fasta	GJA8	chr1	147897795	147914269
GJA8_chr1_147897795_147914269	0/0	a0004	433	1	1	0	0	0	0	copy fasta	GJA8	chr1	147897795	147914269
GJA9_chr1_38869069_38886587	1/1	a0001	515	304	63	45	146	12	36	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	a0002	515	112	18	23	57	5	9	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	a0003	515	10	10	0	0	0	0	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	a0004	515	7	5	2	0	0	0	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	a0005	515	4	0	3	0	0	1	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	a0006	515	2	0	0	0	0	2	copy fasta	GJA9	chr1	38869069	38886587