JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GJA9_chr1_38869069_38886587	0/0	a0007	515	1	1	0	0	0	0	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	a0008	515	1	0	0	1	0	0	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	a0009	515	1	0	0	0	1	0	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	a0010	515	1	1	0	0	0	0	copy fasta	GJA9	chr1	38869069	38886587
GJA9_chr1_38869069_38886587	0/0	a0011	515	1	0	1	0	0	0	copy fasta	GJA9	chr1	38869069	38886587
GJB1_chrX_71218224_71230516	1/1	a0001	283	324	77	62	139	12	32	copy fasta	GJB1	chrX	71218224	71230516
GJB1_chrX_71218224_71230516	0/0	a0002	283	3	3	0	0	0	0	copy fasta	GJB1	chrX	71218224	71230516
GJB1_chrX_71218224_71230516	0/0	a0003	145	1	0	0	1	0	0	copy fasta	GJB1	chrX	71218224	71230516
GJB2_chr13_20182470_20197938	0/0	a0000	0	1	0	0	1	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	1/1	a0001	226	310	99	57	102	18	32	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	a0002	226	49	0	9	40	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	a0003	226	29	0	0	28	0	1	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	a0004	226	10	0	0	10	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	a0005	226	6	0	0	6	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	a0006	226	5	0	0	0	0	5	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	a0007	226	3	0	0	3	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	a0008	226	1	0	1	0	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	a0009	226	1	0	0	0	0	1	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	a0010	226	1	1	0	0	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	a0011	226	1	0	0	1	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	a0012	226	1	0	1	0	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	a0013	226	1	0	0	0	0	1	copy fasta	GJB2	chr13	20182470	20197938
GJB2_chr13_20182470_20197938	0/0	a0014	226	1	0	0	1	0	0	copy fasta	GJB2	chr13	20182470	20197938
GJB3_chr1_34776214_34791364	1/1	a0001	270	417	79	70	204	17	45	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	a0002	270	11	10	1	0	0	0	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	a0003	270	5	1	3	0	1	0	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	a0004	270	4	0	0	4	0	0	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	a0005	270	4	4	0	0	0	0	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	a0006	270	2	0	0	2	0	0	copy fasta	GJB3	chr1	34776214	34791364
GJB3_chr1_34776214_34791364	0/0	a0007	270	1	0	0	0	0	1	copy fasta	GJB3	chr1	34776214	34791364
GJB4_chr1_34754740_34767327	1/1	a0001	266	331	50	59	159	17	44	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	a0002	266	67	28	9	29	0	1	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	a0003	266	22	1	1	16	1	3	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	a0004	266	20	11	6	3	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	a0005	106	10	9	1	0	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	a0006	266	2	0	0	2	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	a0007	266	2	0	0	2	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	a0008	266	1	0	0	1	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	a0009	266	1	0	1	0	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	a0010	266	1	0	0	1	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	a0011	266	1	0	1	0	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	a0012	266	1	0	0	1	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	a0013	266	1	1	0	0	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	a0014	266	1	0	0	1	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB4_chr1_34754740_34767327	0/0	a0015	266	1	0	0	1	0	0	copy fasta	GJB4	chr1	34754740	34767327
GJB5_chr1_34750047_34763512	1/1	a0001	273	460	94	73	229	16	46	copy fasta	GJB5	chr1	34750047	34763512
GJB5_chr1_34750047_34763512	0/0	a0002	273	4	4	0	0	0	0	copy fasta	GJB5	chr1	34750047	34763512
GJB5_chr1_34750047_34763512	0/0	a0003	273	1	0	1	0	0	0	copy fasta	GJB5	chr1	34750047	34763512
GJB5_chr1_34750047_34763512	0/0	a0004	273	1	0	0	1	0	0	copy fasta	GJB5	chr1	34750047	34763512
GJB5_chr1_34750047_34763512	0/0	a0005	273	1	0	0	1	0	0	copy fasta	GJB5	chr1	34750047	34763512