JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GJB5_chr1_34750047_34763512	0/0	a0006	273	1	0	0	1	0	0	copy fasta	GJB5	chr1	34750047	34763512
GJB6_chr13_20216962_20237319	1/1	a0001	261	457	99	82	210	16	48	copy fasta	GJB6	chr13	20216962	20237319
GJB6_chr13_20216962_20237319	0/0	a0002	261	1	0	0	1	0	0	copy fasta	GJB6	chr13	20216962	20237319
GJB6_chr13_20216962_20237319	0/0	a0003	261	1	1	0	0	0	0	copy fasta	GJB6	chr13	20216962	20237319
GJB6_chr13_20216962_20237319	0/0	a0004	261	1	0	0	1	0	0	copy fasta	GJB6	chr13	20216962	20237319
GJB7_chr6_87277980_87334278	0/1	a0001	223	226	53	38	104	7	23	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	1/0	a0002	223	110	12	20	55	7	15	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	a0003	223	21	16	4	0	0	1	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	a0004	223	14	0	5	5	2	2	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	a0005	223	5	5	0	0	0	0	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	a0006	223	2	1	1	0	0	0	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	a0007	223	2	0	0	2	0	0	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	a0008	223	1	1	0	0	0	0	copy fasta	GJB7	chr6	87277980	87334278
GJB7_chr6_87277980_87334278	0/0	a0009	223	1	0	0	0	0	1	copy fasta	GJB7	chr6	87277980	87334278
GJC1_chr17_44793448_44835287	1/1	a0001	396	380	94	68	166	10	40	copy fasta	GJC1	chr17	44793448	44835287
GJC2_chr1_228144930_228164826	0/0	a0000	0	8	0	3	4	0	1	copy fasta	GJC2	chr1	228144930	228164826
GJC2_chr1_228144930_228164826	1/1	a0001	439	392	88	70	176	16	40	copy fasta	GJC2	chr1	228144930	228164826
GJC2_chr1_228144930_228164826	0/0	a0002	439	4	4	0	0	0	0	copy fasta	GJC2	chr1	228144930	228164826
GJC2_chr1_228144930_228164826	0/0	a0003	439	4	4	0	0	0	0	copy fasta	GJC2	chr1	228144930	228164826
GJC2_chr1_228144930_228164826	0/0	a0004	439	3	0	0	0	0	3	copy fasta	GJC2	chr1	228144930	228164826
GJC2_chr1_228144930_228164826	0/0	a0005	439	2	0	0	2	0	0	copy fasta	GJC2	chr1	228144930	228164826
GJC2_chr1_228144930_228164826	0/0	a0006	439	1	0	1	0	0	0	copy fasta	GJC2	chr1	228144930	228164826
GJC3_chr7_99918266_99934620	1/1	a0001	279	379	89	66	160	17	45	copy fasta	GJC3	chr7	99918266	99934620
GJC3_chr7_99918266_99934620	0/0	a0002	279	5	5	0	0	0	0	copy fasta	GJC3	chr7	99918266	99934620
GJC3_chr7_99918266_99934620	0/0	a0003	279	4	0	3	0	1	0	copy fasta	GJC3	chr7	99918266	99934620
GJC3_chr7_99918266_99934620	0/0	a0004	55	2	0	0	2	0	0	copy fasta	GJC3	chr7	99918266	99934620
GJC3_chr7_99918266_99934620	0/0	a0005	279	1	0	0	0	0	1	copy fasta	GJC3	chr7	99918266	99934620
GJC3_chr7_99918266_99934620	0/0	a0006	279	1	0	1	0	0	0	copy fasta	GJC3	chr7	99918266	99934620
GJD2_chr15_34746032_34759998	1/1	a0001	321	442	94	76	210	18	42	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	a0002	321	3	3	0	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD2_chr15_34746032_34759998	0/0	a0003	321	1	1	0	0	0	0	copy fasta	GJD2	chr15	34746032	34759998
GJD3_chr17_40355652_40369737	1/1	a0001	294	364	81	77	145	17	42	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	a0002	294	2	0	1	0	1	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	a0003	294	1	1	0	0	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	a0004	294	1	1	0	0	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	a0005	294	1	0	0	1	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD3_chr17_40355652_40369737	0/0	a0006	294	1	1	0	0	0	0	copy fasta	GJD3	chr17	40355652	40369737
GJD4_chr10_35600341_35613935	1/1	a0001	370	427	91	73	201	16	44	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	a0002	370	3	2	1	0	0	0	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	a0003	370	2	0	1	0	1	0	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	a0004	370	1	0	0	0	0	1	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	a0005	370	1	0	0	1	0	0	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	a0006	370	1	1	0	0	0	0	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	a0007	370	1	0	0	1	0	0	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	a0008	370	1	0	1	0	0	0	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	a0009	370	1	0	0	0	0	1	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	a0010	370	1	0	0	1	0	0	copy fasta	GJD4	chr10	35600341	35613935
GJD4_chr10_35600341_35613935	0/0	a0011	370	1	0	0	0	1	0	copy fasta	GJD4	chr10	35600341	35613935
GJE1_chr6_142127925_142140358	1/0	a0001	205	333	85	66	139	12	30	copy fasta	GJE1	chr6	142127925	142140358
GJE1_chr6_142127925_142140358	0/0	a0002	205	56	1	6	36	4	9	copy fasta	GJE1	chr6	142127925	142140358