JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GLB1L2_chr11_134326988_134381324	0/0	a0005	636	2	0	0	2	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	a0006	636	2	0	0	2	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	a0007	636	1	1	0	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	a0008	95	1	0	0	1	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	a0009	636	1	0	1	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/1	a0010	636	1	0	0	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	a0011	204	1	0	0	1	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	a0012	636	1	0	0	1	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	a0013	636	1	0	1	0	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	a0014	636	1	0	0	0	0	1	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	a0015	636	1	0	0	1	0	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L2_chr11_134326988_134381324	0/0	a0016	636	1	0	0	0	1	0	copy fasta	GLB1L2	chr11	134326988	134381324
GLB1L3_chr11_134271379_134324564	0/1	a0001	653	342	84	68	141	17	31	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	a0002	653	61	2	7	42	0	10	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	a0003	653	8	8	0	0	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	1/0	a0004	653	4	0	0	2	1	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	a0005	653	2	2	0	0	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	a0006	47	1	0	0	0	0	1	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	a0007	653	1	1	0	0	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	a0008	653	1	0	0	1	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	a0009	653	1	1	0	0	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L3_chr11_134271379_134324564	0/0	a0010	653	1	0	1	0	0	0	copy fasta	GLB1L3	chr11	134271379	134324564
GLB1L_chr2_219231598_219250444	1/1	a0001	654	400	87	84	164	18	45	copy fasta	GLB1L	chr2	219231598	219250444
GLB1L_chr2_219231598_219250444	0/0	a0002	654	4	0	0	4	0	0	copy fasta	GLB1L	chr2	219231598	219250444
GLB1L_chr2_219231598_219250444	0/0	a0003	654	3	0	0	0	0	3	copy fasta	GLB1L	chr2	219231598	219250444
GLB1L_chr2_219231598_219250444	0/0	a0004	654	2	2	0	0	0	0	copy fasta	GLB1L	chr2	219231598	219250444
GLB1L_chr2_219231598_219250444	0/0	a0005	654	1	1	0	0	0	0	copy fasta	GLB1L	chr2	219231598	219250444
GLB1_chr3_32991617_33102146	0/0	a0001	677	225	66	32	98	9	20	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/1	a0002	677	124	2	27	69	5	20	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	1/0	a0003	677	26	23	2	0	0	0	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/0	a0004	677	10	2	6	0	0	2	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/0	a0005	677	3	0	0	3	0	0	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/0	a0006	677	1	0	0	1	0	0	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/0	a0007	677	1	0	0	1	0	0	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/0	a0008	677	1	0	1	0	0	0	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/0	a0009	677	1	1	0	0	0	0	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/0	a0010	677	1	0	0	0	0	1	copy fasta	GLB1	chr3	32991617	33102146
GLB1_chr3_32991617_33102146	0/0	a0011	677	1	0	0	0	0	1	copy fasta	GLB1	chr3	32991617	33102146
GLCCI1_chr7_7963796_8094080	1/1	a0001	547	396	74	70	192	14	44	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	a0002	548	17	16	1	0	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	a0003	547	1	0	1	0	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	a0004	547	1	1	0	0	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCCI1_chr7_7963796_8094080	0/0	a0005	547	1	1	0	0	0	0	copy fasta	GLCCI1	chr7	7963796	8094080
GLCE_chr15_69155635_69277207	0/1	a0001	617	212	41	23	119	5	23	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	1/0	a0002	617	111	44	15	42	3	6	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	a0003	617	10	0	2	7	0	1	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	a0004	617	6	6	0	0	0	0	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	a0005	617	2	0	0	0	2	0	copy fasta	GLCE	chr15	69155635	69277207
GLCE_chr15_69155635_69277207	0/0	a0006	617	1	1	0	0	0	0	copy fasta	GLCE	chr15	69155635	69277207
GLDC_chr9_6527467_6650729	1/1	a0001	1020	291	66	49	136	14	24	copy fasta	GLDC	chr9	6527467	6650729