JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GLDC_chr9_6527467_6650729	0/0	a0002	1020	15	12	2	0	0	1	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	a0003	1020	8	7	1	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	a0004	1020	5	0	4	1	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	a0005	1020	5	4	1	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	a0006	1020	4	0	4	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	a0007	1020	2	0	0	0	0	2	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	a0008	1020	2	0	0	2	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	a0009	1020	2	0	0	2	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	a0010	166	1	0	1	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	a0011	1020	1	0	0	0	0	1	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	a0012	1020	1	0	0	0	0	1	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	a0013	1020	1	0	0	1	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	a0014	1020	1	0	0	1	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	a0015	1020	1	0	0	0	0	1	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	a0016	548	1	0	0	1	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDC_chr9_6527467_6650729	0/0	a0017	1020	1	1	0	0	0	0	copy fasta	GLDC	chr9	6527467	6650729
GLDN_chr15_51336655_51413000	1/1	a0001	551	208	65	53	53	6	29	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	a0002	551	150	27	13	91	7	12	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	a0003	551	21	0	1	20	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	a0004	551	15	0	1	13	0	1	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	a0005	551	5	0	1	4	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	a0006	551	5	0	3	2	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	a0007	551	2	0	0	2	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	a0008	551	2	0	2	0	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	a0009	551	1	0	0	0	1	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	a0010	551	1	0	0	1	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	a0011	551	1	0	0	1	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLDN_chr15_51336655_51413000	0/0	a0012	551	1	0	0	1	0	0	copy fasta	GLDN	chr15	51336655	51413000
GLE1_chr9_128499719_128547288	1/1	a0001	698	192	49	37	77	6	21	copy fasta	GLE1	chr9	128499719	128547288
GLE1_chr9_128499719_128547288	0/0	a0002	698	165	32	21	93	4	15	copy fasta	GLE1	chr9	128499719	128547288
GLE1_chr9_128499719_128547288	0/0	a0003	698	1	1	0	0	0	0	copy fasta	GLE1	chr9	128499719	128547288
GLE1_chr9_128499719_128547288	0/0	a0004	698	1	0	1	0	0	0	copy fasta	GLE1	chr9	128499719	128547288
GLE1_chr9_128499719_128547288	0/0	a0005	698	1	0	1	0	0	0	copy fasta	GLE1	chr9	128499719	128547288
GLG1_chr16_74442440_74612114	1/1	a0001	1179	337	78	67	138	12	40	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	a0002	1179	2	0	0	2	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	a0003	1179	1	0	0	1	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	a0004	1179	1	0	1	0	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLG1_chr16_74442440_74612114	0/0	a0005	1179	1	0	0	1	0	0	copy fasta	GLG1	chr16	74442440	74612114
GLI1_chr12_57454785_57477268	1/0	a0001	1106	170	26	34	86	4	19	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/1	a0002	1106	153	19	30	86	5	12	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	a0003	1106	61	52	5	0	0	4	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	a0004	1106	17	0	0	16	0	1	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	a0005	1106	2	2	0	0	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	a0006	1106	1	0	0	1	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	a0007	1106	1	0	0	1	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	a0008	1106	1	0	1	0	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	a0009	1106	1	0	0	1	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	a0010	1106	1	1	0	0	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	a0011	1106	1	0	1	0	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	a0012	1106	1	0	0	0	0	1	copy fasta	GLI1	chr12	57454785	57477268