JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GLI1_chr12_57454785_57477268	0/0	a0013	1106	1	0	1	0	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	a0014	188	1	0	0	0	1	0	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	a0015	1106	1	0	0	0	0	1	copy fasta	GLI1	chr12	57454785	57477268
GLI1_chr12_57454785_57477268	0/0	a0016	1106	1	0	0	1	0	0	copy fasta	GLI1	chr12	57454785	57477268
GLI2_chr2_120730868_120997653	0/0	a0001	1569	65	29	10	16	3	7	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	a0002	1569	62	18	15	13	5	11	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	a0003	1569	16	15	1	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	a0004	1569	3	1	2	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	a0005	1569	2	2	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	a0006	1569	2	0	2	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	a0007	1569	1	0	0	1	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	a0008	1569	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	a0009	1569	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	a0010	1569	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	a0011	1569	1	0	0	0	0	1	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	a0012	1569	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	a0013	1569	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	a0014	1569	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	a0015	1569	1	0	0	0	0	1	copy fasta	GLI2	chr2	120730868	120997653
GLI2_chr2_120730868_120997653	0/0	a0016	1569	1	1	0	0	0	0	copy fasta	GLI2	chr2	120730868	120997653
GLI3_chr7_41955949_42242209	0/0	a0001	1580	91	62	10	7	6	6	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	a0002	1580	23	7	1	10	0	5	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	a0003	1580	22	1	11	7	2	1	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	1/1	a0004	1580	16	5	3	3	0	3	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	a0005	1580	2	2	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	a0006	1580	1	0	1	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	a0007	1580	1	1	0	0	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	a0008	1580	1	0	0	0	0	1	copy fasta	GLI3	chr7	41955949	42242209
GLI3_chr7_41955949_42242209	0/0	a0009	1580	1	0	0	1	0	0	copy fasta	GLI3	chr7	41955949	42242209
GLI4_chr8_143262445_143281931	1/0	a0001	376	191	67	23	72	8	20	copy fasta	GLI4	chr8	143262445	143281931
GLI4_chr8_143262445_143281931	0/1	a0002	376	175	7	50	89	6	22	copy fasta	GLI4	chr8	143262445	143281931
GLI4_chr8_143262445_143281931	0/0	a0003	376	23	23	0	0	0	0	copy fasta	GLI4	chr8	143262445	143281931
GLI4_chr8_143262445_143281931	0/0	a0004	376	3	1	2	0	0	0	copy fasta	GLI4	chr8	143262445	143281931
GLI4_chr8_143262445_143281931	0/0	a0005	160	1	0	1	0	0	0	copy fasta	GLI4	chr8	143262445	143281931
GLI4_chr8_143262445_143281931	0/0	a0006	376	1	0	0	1	0	0	copy fasta	GLI4	chr8	143262445	143281931
GLIPR1L1_chr12_75329670_75375560	1/1	a0001	242	360	77	61	164	14	42	copy fasta	GLIPR1L1	chr12	75329670	75375560
GLIPR1L1_chr12_75329670_75375560	0/0	a0002	242	7	7	0	0	0	0	copy fasta	GLIPR1L1	chr12	75329670	75375560
GLIPR1L1_chr12_75329670_75375560	0/0	a0003	242	2	1	1	0	0	0	copy fasta	GLIPR1L1	chr12	75329670	75375560
GLIPR1L1_chr12_75329670_75375560	0/0	a0004	242	1	1	0	0	0	0	copy fasta	GLIPR1L1	chr12	75329670	75375560
GLIPR1L2_chr12_75386089_75437688	1/1	a0001	344	353	82	60	157	12	40	copy fasta	GLIPR1L2	chr12	75386089	75437688
GLIPR1L2_chr12_75386089_75437688	0/0	a0002	344	3	3	0	0	0	0	copy fasta	GLIPR1L2	chr12	75386089	75437688
GLIPR1L2_chr12_75386089_75437688	0/0	a0003	344	2	0	0	0	0	2	copy fasta	GLIPR1L2	chr12	75386089	75437688
GLIPR1L2_chr12_75386089_75437688	0/0	a0004	344	1	1	0	0	0	0	copy fasta	GLIPR1L2	chr12	75386089	75437688
GLIPR1L2_chr12_75386089_75437688	0/0	a0005	344	1	0	0	1	0	0	copy fasta	GLIPR1L2	chr12	75386089	75437688
GLIPR1_chr12_75475755_75508863	1/1	a0001	266	356	89	62	154	16	33	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	a0002	266	2	0	0	2	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	a0003	266	1	0	0	1	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	a0004	266	1	0	0	0	0	1	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	a0005	266	1	0	0	1	0	0	copy fasta	GLIPR1	chr12	75475755	75508863
GLIPR1_chr12_75475755_75508863	0/0	a0006	266	1	1	0	0	0	0	copy fasta	GLIPR1	chr12	75475755	75508863