Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AKAP12_chr6_151234967_151363559	0/0	a0011	1782	4	4	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0012	1783	3	0	2	0	0	1	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0013	1782	3	0	0	3	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0014	1783	3	3	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0015	1782	3	1	0	2	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0016	1782	3	3	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0017	1783	3	0	1	2	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0018	1783	2	2	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0019	1782	2	2	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0020	1782	2	2	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0021	1783	2	0	0	0	0	2	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0022	1783	2	2	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0023	1783	2	2	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0024	1782	2	2	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0025	1783	1	0	0	1	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0026	1783	1	0	0	1	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0027	1783	1	0	0	1	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0028	1783	1	0	1	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0029	1783	1	0	0	0	0	1	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0030	1783	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0031	1783	1	0	1	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0032	1783	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0033	1783	1	0	1	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0034	1783	1	0	0	0	0	1	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0035	1783	1	0	0	0	0	1	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0036	1783	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0037	1782	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0038	1782	1	0	0	0	0	1	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0039	1783	1	1	0	0	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0040	1782	1	0	0	1	0	0	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0041	1783	1	0	0	0	0	1	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0042	1783	1	0	0	0	0	1	copy fasta	AKAP12	chr6	151234967	151363559
AKAP12_chr6_151234967_151363559	0/0	a0043	1782	1	0	0	0	0	1	copy fasta	AKAP12	chr6	151234967	151363559
AKAP13_chr15_85375603_85754355	1/0	a0001	2813	96	18	13	47	5	12	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0002	2813	65	10	3	38	2	12	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0003	2813	35	3	6	24	0	2	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0004	2813	17	13	4	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0005	2813	16	1	9	1	1	4	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0006	2813	10	0	5	5	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0007	2813	8	8	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0008	2813	8	0	4	0	1	3	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0009	2813	6	3	3	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0010	2813	5	0	3	0	2	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0011	2813	4	3	1	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0012	2813	4	0	0	4	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0013	2813	3	2	1	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0014	2813	2	2	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0015	2813	2	0	1	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0016	2813	2	0	0	2	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0017	2813	2	2	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355