JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GLIS3_chr9_3819127_4305068	0/0	a0006	930	2	2	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	a0007	930	2	2	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	a0008	930	2	2	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	a0009	930	2	2	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	a0010	930	1	0	1	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	a0011	930	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	a0012	930	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	a0013	930	1	0	1	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	a0014	930	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	a0015	930	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	a0016	930	1	0	0	1	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	a0017	930	1	0	1	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	a0018	930	1	0	0	1	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	a0019	930	1	0	0	1	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	a0020	930	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	a0021	930	1	0	0	0	0	1	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	a0022	930	1	0	0	1	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	a0023	930	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLIS3_chr9_3819127_4305068	0/0	a0024	930	1	1	0	0	0	0	copy fasta	GLIS3	chr9	3819127	4305068
GLMN_chr1_92241402_92303987	1/1	a0001	594	186	69	48	32	10	25	copy fasta	GLMN	chr1	92241402	92303987
GLMN_chr1_92241402_92303987	0/0	a0002	594	9	9	0	0	0	0	copy fasta	GLMN	chr1	92241402	92303987
GLMN_chr1_92241402_92303987	0/0	a0003	594	1	1	0	0	0	0	copy fasta	GLMN	chr1	92241402	92303987
GLMN_chr1_92241402_92303987	0/0	a0004	594	1	0	1	0	0	0	copy fasta	GLMN	chr1	92241402	92303987
GLMN_chr1_92241402_92303987	0/0	a0005	594	1	1	0	0	0	0	copy fasta	GLMN	chr1	92241402	92303987
GLMN_chr1_92241402_92303987	0/0	a0006	594	1	0	1	0	0	0	copy fasta	GLMN	chr1	92241402	92303987
GLMN_chr1_92241402_92303987	0/0	a0007	594	1	0	0	0	0	1	copy fasta	GLMN	chr1	92241402	92303987
GLMP_chr1_156287688_156300679	1/0	a0001	406	282	78	44	131	7	21	copy fasta	GLMP	chr1	156287688	156300679
GLMP_chr1_156287688_156300679	0/0	a0002	406	80	5	12	44	6	13	copy fasta	GLMP	chr1	156287688	156300679
GLMP_chr1_156287688_156300679	0/1	a0003	406	17	0	4	8	3	1	copy fasta	GLMP	chr1	156287688	156300679
GLMP_chr1_156287688_156300679	0/0	a0004	406	11	0	11	0	0	0	copy fasta	GLMP	chr1	156287688	156300679
GLMP_chr1_156287688_156300679	0/0	a0005	406	2	1	1	0	0	0	copy fasta	GLMP	chr1	156287688	156300679
GLMP_chr1_156287688_156300679	0/0	a0006	406	1	0	0	0	0	1	copy fasta	GLMP	chr1	156287688	156300679
GLMP_chr1_156287688_156300679	0/0	a0007	406	1	0	0	1	0	0	copy fasta	GLMP	chr1	156287688	156300679
GLMP_chr1_156287688_156300679	0/0	a0008	406	1	1	0	0	0	0	copy fasta	GLMP	chr1	156287688	156300679
GLMP_chr1_156287688_156300679	0/0	a0009	406	1	1	0	0	0	0	copy fasta	GLMP	chr1	156287688	156300679
GLO1_chr6_38670925_38708145	1/0	a0001	184	315	69	45	159	8	33	copy fasta	GLO1	chr6	38670925	38708145
GLO1_chr6_38670925_38708145	0/1	a0002	184	95	25	31	19	8	11	copy fasta	GLO1	chr6	38670925	38708145
GLOD4_chr17_754330_787280	1/1	a0001	298	403	92	71	176	17	45	copy fasta	GLOD4	chr17	754330	787280
GLOD4_chr17_754330_787280	0/0	a0002	298	12	0	2	9	0	1	copy fasta	GLOD4	chr17	754330	787280
GLOD4_chr17_754330_787280	0/0	a0003	298	2	0	1	0	1	0	copy fasta	GLOD4	chr17	754330	787280
GLOD4_chr17_754330_787280	0/0	a0004	298	1	0	0	1	0	0	copy fasta	GLOD4	chr17	754330	787280
GLOD4_chr17_754330_787280	0/0	a0005	298	1	0	0	1	0	0	copy fasta	GLOD4	chr17	754330	787280
GLOD4_chr17_754330_787280	0/0	a0006	298	1	0	0	1	0	0	copy fasta	GLOD4	chr17	754330	787280
GLOD5_chrX_48756747_48778648	1/1	a0001	160	253	66	47	108	8	22	copy fasta	GLOD5	chrX	48756747	48778648
GLOD5_chrX_48756747_48778648	0/0	a0002	160	11	10	1	0	0	0	copy fasta	GLOD5	chrX	48756747	48778648
GLOD5_chrX_48756747_48778648	0/0	a0003	41	1	0	0	1	0	0	copy fasta	GLOD5	chrX	48756747	48778648
GLOD5_chrX_48756747_48778648	0/0	a0004	160	1	0	0	0	1	0	copy fasta	GLOD5	chrX	48756747	48778648
GLOD5_chrX_48756747_48778648	0/0	a0005	144	1	0	0	1	0	0	copy fasta	GLOD5	chrX	48756747	48778648
GLOD5_chrX_48756747_48778648	0/0	a0006	121	1	0	0	1	0	0	copy fasta	GLOD5	chrX	48756747	48778648
GLOD5_chrX_48756747_48778648	0/0	a0007	80	1	0	0	1	0	0	copy fasta	GLOD5	chrX	48756747	48778648