JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GLP1R_chr6_39043781_39096303	0/1	a0001	463	150	56	18	54	3	18	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	1/0	a0002	463	149	35	27	63	4	19	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	a0003	463	44	0	4	40	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	a0004	463	36	1	6	25	2	2	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	a0005	463	18	0	9	0	2	7	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	a0006	463	13	0	8	1	3	1	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	a0007	463	9	1	3	5	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	a0008	463	5	0	0	5	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	a0009	463	5	5	0	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	a0010	463	2	0	0	1	0	1	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	a0011	463	1	0	0	1	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	a0012	463	1	0	1	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	a0013	463	1	0	1	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	a0014	463	1	0	1	0	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	a0015	463	1	0	0	1	0	0	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	a0016	463	1	0	0	0	0	1	copy fasta	GLP1R	chr6	39043781	39096303
GLP1R_chr6_39043781_39096303	0/0	a0017	463	1	0	0	0	0	1	copy fasta	GLP1R	chr6	39043781	39096303
GLP2R_chr17_9820924_9897099	1/1	a0001	553	323	65	64	142	13	37	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	a0002	553	24	1	16	0	3	4	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	a0003	553	10	10	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	a0004	553	7	7	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	a0005	553	6	6	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	a0006	553	3	3	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	a0007	553	3	3	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	a0008	553	2	2	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	a0009	553	1	0	0	0	0	1	copy fasta	GLP2R	chr17	9820924	9897099
GLP2R_chr17_9820924_9897099	0/0	a0010	553	1	1	0	0	0	0	copy fasta	GLP2R	chr17	9820924	9897099
GLRA1_chr5_151817513_151929851	1/1	a0001	449	279	87	51	101	12	26	copy fasta	GLRA1	chr5	151817513	151929851
GLRA1_chr5_151817513_151929851	0/0	a0002	449	4	3	1	0	0	0	copy fasta	GLRA1	chr5	151817513	151929851
GLRA1_chr5_151817513_151929851	0/0	a0003	449	1	0	0	1	0	0	copy fasta	GLRA1	chr5	151817513	151929851
GLRA2_chrX_14524536_14736812	1/1	a0001	452	231	69	47	80	11	22	copy fasta	GLRA2	chrX	14524536	14736812
GLRA2_chrX_14524536_14736812	0/0	a0002	452	1	1	0	0	0	0	copy fasta	GLRA2	chrX	14524536	14736812
GLRA3_chr4_174631920_174834247	1/1	a0001	464	294	91	65	92	10	34	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	a0002	464	1	1	0	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRA3_chr4_174631920_174834247	0/0	a0003	464	1	0	1	0	0	0	copy fasta	GLRA3	chr4	174631920	174834247
GLRB_chr4_157071150_157177090	1/1	a0001	497	302	90	46	135	4	25	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	a0002	497	1	0	0	0	0	1	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	a0003	497	1	0	0	0	0	1	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	a0004	497	1	0	0	1	0	0	copy fasta	GLRB	chr4	157071150	157177090
GLRB_chr4_157071150_157177090	0/0	a0005	497	1	0	0	0	0	1	copy fasta	GLRB	chr4	157071150	157177090
GLRX2_chr1_193091470_193110414	1/1	a0001	164	382	86	56	177	17	44	copy fasta	GLRX2	chr1	193091470	193110414
GLRX2_chr1_193091470_193110414	0/0	a0002	164	2	2	0	0	0	0	copy fasta	GLRX2	chr1	193091470	193110414
GLRX2_chr1_193091470_193110414	0/0	a0003	124	1	0	0	0	1	0	copy fasta	GLRX2	chr1	193091470	193110414
GLRX2_chr1_193091470_193110414	0/0	a0004	164	1	0	0	1	0	0	copy fasta	GLRX2	chr1	193091470	193110414
GLRX3_chr10_130131391_130184672	1/1	a0001	335	362	80	69	171	13	27	copy fasta	GLRX3	chr10	130131391	130184672
GLRX3_chr10_130131391_130184672	0/0	a0002	335	55	12	8	23	3	9	copy fasta	GLRX3	chr10	130131391	130184672
GLRX3_chr10_130131391_130184672	0/0	a0003	335	4	1	1	0	0	2	copy fasta	GLRX3	chr10	130131391	130184672
GLRX3_chr10_130131391_130184672	0/0	a0004	335	2	0	0	0	0	2	copy fasta	GLRX3	chr10	130131391	130184672
GLRX3_chr10_130131391_130184672	0/0	a0005	335	1	1	0	0	0	0	copy fasta	GLRX3	chr10	130131391	130184672
GLRX5_chr14_95530050_95549714	1/0	a0001	157	427	94	69	205	13	45	copy fasta	GLRX5	chr14	95530050	95549714