JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GLRX5_chr14_95530050_95549714	0/1	a0002	157	31	4	11	9	3	3	copy fasta	GLRX5	chr14	95530050	95549714
GLRX5_chr14_95530050_95549714	0/0	a0003	157	1	0	0	1	0	0	copy fasta	GLRX5	chr14	95530050	95549714
GLRX5_chr14_95530050_95549714	0/0	a0004	157	1	0	0	1	0	0	copy fasta	GLRX5	chr14	95530050	95549714
GLRX_chr5_95808849_95827726	1/1	a0001	106	420	98	80	176	18	46	copy fasta	GLRX	chr5	95808849	95827726
GLS2_chr12_56465952_56493161	1/1	a0001	602	314	87	52	133	12	28	copy fasta	GLS2	chr12	56465952	56493161
GLS2_chr12_56465952_56493161	0/0	a0002	602	46	1	18	19	4	4	copy fasta	GLS2	chr12	56465952	56493161
GLS2_chr12_56465952_56493161	0/0	a0003	602	1	0	0	1	0	0	copy fasta	GLS2	chr12	56465952	56493161
GLS2_chr12_56465952_56493161	0/0	a0004	602	1	0	0	1	0	0	copy fasta	GLS2	chr12	56465952	56493161
GLS_chr2_190875821_190970552	1/1	a0001	669	367	84	64	171	16	30	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	a0002	669	6	0	0	6	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	a0003	669	2	0	0	0	0	2	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	a0004	669	2	0	2	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	a0005	669	1	0	0	1	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	a0006	669	1	1	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLS_chr2_190875821_190970552	0/0	a0007	669	1	1	0	0	0	0	copy fasta	GLS	chr2	190875821	190970552
GLT1D1_chr12_128848478_128989968	1/1	a0001	346	284	58	56	116	14	38	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	a0002	346	18	17	1	0	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	a0003	346	7	7	0	0	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	a0004	346	3	0	0	3	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	a0005	346	2	1	1	0	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	a0006	346	2	0	0	2	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	a0007	346	1	1	0	0	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	a0008	346	1	0	1	0	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	a0009	346	1	0	1	0	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT1D1_chr12_128848478_128989968	0/0	a0010	346	1	0	0	1	0	0	copy fasta	GLT1D1	chr12	128848478	128989968
GLT6D1_chr9_135618648_135644540	1/1	a0001	276	285	72	47	120	12	32	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	a0002	150	82	3	19	45	2	13	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	a0003	276	53	9	12	32	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	a0004	276	6	3	2	0	0	1	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	a0005	150	2	0	0	2	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	a0006	229	2	1	1	0	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	a0007	150	1	1	0	0	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	a0008	276	1	0	0	1	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	a0009	276	1	1	0	0	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	a0010	276	1	1	0	0	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	a0011	276	1	1	0	0	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT6D1_chr9_135618648_135644540	0/0	a0012	276	1	0	1	0	0	0	copy fasta	GLT6D1	chr9	135618648	135644540
GLT8D1_chr3_52689486_52710791	1/1	a0001	371	375	95	71	151	16	40	copy fasta	GLT8D1	chr3	52689486	52710791
GLT8D1_chr3_52689486_52710791	0/0	a0002	371	16	0	3	13	0	0	copy fasta	GLT8D1	chr3	52689486	52710791
GLT8D1_chr3_52689486_52710791	0/0	a0003	371	2	2	0	0	0	0	copy fasta	GLT8D1	chr3	52689486	52710791
GLT8D1_chr3_52689486_52710791	0/0	a0004	371	1	1	0	0	0	0	copy fasta	GLT8D1	chr3	52689486	52710791
GLT8D2_chr12_103983987_104055187	1/1	a0001	349	340	91	61	132	15	39	copy fasta	GLT8D2	chr12	103983987	104055187
GLT8D2_chr12_103983987_104055187	0/0	a0002	349	74	4	7	52	1	10	copy fasta	GLT8D2	chr12	103983987	104055187
GLT8D2_chr12_103983987_104055187	0/0	a0003	349	1	1	0	0	0	0	copy fasta	GLT8D2	chr12	103983987	104055187
GLT8D2_chr12_103983987_104055187	0/0	a0004	349	1	0	0	0	0	1	copy fasta	GLT8D2	chr12	103983987	104055187
GLTPD2_chr17_4783964_4795589	0/1	a0001	291	303	84	69	115	12	22	copy fasta	GLTPD2	chr17	4783964	4795589
GLTPD2_chr17_4783964_4795589	0/0	a0002	291	150	6	15	101	6	22	copy fasta	GLTPD2	chr17	4783964	4795589
GLTPD2_chr17_4783964_4795589	0/0	a0003	291	2	2	0	0	0	0	copy fasta	GLTPD2	chr17	4783964	4795589
GLTPD2_chr17_4783964_4795589	0/0	a0004	291	2	0	0	2	0	0	copy fasta	GLTPD2	chr17	4783964	4795589
GLTPD2_chr17_4783964_4795589	1/0	a0005	291	2	1	0	0	0	0	copy fasta	GLTPD2	chr17	4783964	4795589