JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GLYATL3_chr6_49494923_49533078	0/0	a0010	288	1	0	0	0	0	1	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	a0011	288	1	1	0	0	0	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	a0012	288	1	0	0	0	0	1	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	a0013	288	1	0	0	1	0	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	a0014	288	1	0	0	1	0	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYATL3_chr6_49494923_49533078	0/0	a0015	288	1	0	1	0	0	0	copy fasta	GLYATL3	chr6	49494923	49533078
GLYAT_chr11_58703757_58736943	0/1	a0001	296	220	76	38	77	9	19	copy fasta	GLYAT	chr11	58703757	58736943
GLYAT_chr11_58703757_58736943	0/0	a0002	296	89	15	17	49	1	7	copy fasta	GLYAT	chr11	58703757	58736943
GLYAT_chr11_58703757_58736943	1/0	a0003	296	45	0	7	32	0	5	copy fasta	GLYAT	chr11	58703757	58736943
GLYAT_chr11_58703757_58736943	0/0	a0004	296	5	0	0	5	0	0	copy fasta	GLYAT	chr11	58703757	58736943
GLYAT_chr11_58703757_58736943	0/0	a0005	296	3	0	0	3	0	0	copy fasta	GLYAT	chr11	58703757	58736943
GLYAT_chr11_58703757_58736943	0/0	a0006	296	1	1	0	0	0	0	copy fasta	GLYAT	chr11	58703757	58736943
GLYAT_chr11_58703757_58736943	0/0	a0007	296	1	0	0	0	0	1	copy fasta	GLYAT	chr11	58703757	58736943
GLYCTK_chr3_52282828_52300257	1/1	a0001	523	346	81	67	141	15	40	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	a0002	523	8	0	4	3	1	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	a0003	523	3	2	1	0	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	a0004	523	2	2	0	0	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	a0005	523	1	1	0	0	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	a0006	523	1	1	0	0	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	a0007	523	1	0	0	1	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	a0008	523	1	0	0	1	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	a0009	523	1	1	0	0	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	a0010	523	1	0	0	1	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYCTK_chr3_52282828_52300257	0/0	a0011	523	1	0	0	1	0	0	copy fasta	GLYCTK	chr3	52282828	52300257
GLYR1_chr16_4798203_4852288	1/1	a0001	553	351	93	62	140	18	36	copy fasta	GLYR1	chr16	4798203	4852288
GLYR1_chr16_4798203_4852288	0/0	a0002	553	1	1	0	0	0	0	copy fasta	GLYR1	chr16	4798203	4852288
GM2A_chr5_151248185_151275440	0/0	a0001	193	261	58	41	127	8	27	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/0	a0002	193	59	28	3	26	0	2	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/1	a0003	193	40	1	1	30	1	6	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	1/0	a0004	193	26	8	8	0	4	5	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/0	a0005	193	14	0	3	2	1	8	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/0	a0006	193	11	1	2	6	0	2	copy fasta	GM2A	chr5	151248185	151275440
GM2A_chr5_151248185_151275440	0/0	a0007	193	1	0	0	1	0	0	copy fasta	GM2A	chr5	151248185	151275440
GMCL1_chr2_69824660_69886384	1/1	a0001	515	385	90	66	179	14	34	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	a0002	515	1	0	0	1	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	a0003	515	1	1	0	0	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	a0004	515	1	1	0	0	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	a0005	515	1	0	0	1	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL1_chr2_69824660_69886384	0/0	a0006	515	1	0	0	1	0	0	copy fasta	GMCL1	chr2	69824660	69886384
GMCL2_chr5_178179505_178192371	0/0	a0001	526	134	22	16	87	0	9	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	a0002	526	117	17	39	30	8	23	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	a0003	526	77	1	13	51	2	10	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/1	a0004	526	44	16	8	13	2	4	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	1/0	a0005	526	26	22	2	0	1	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	a0006	526	25	5	1	14	1	4	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	a0007	526	8	7	0	0	1	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	a0008	526	5	0	0	5	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	a0009	526	4	2	2	0	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	a0010	526	4	4	0	0	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	a0011	526	2	1	1	0	0	0	copy fasta	GMCL2	chr5	178179505	178192371