JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GMCL2_chr5_178179505_178192371	0/0	a0012	526	1	0	0	1	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	a0013	526	1	0	0	1	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	a0014	526	1	0	0	0	1	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	a0015	526	1	1	0	0	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	a0016	526	1	1	0	0	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMCL2_chr5_178179505_178192371	0/0	a0017	526	1	1	0	0	0	0	copy fasta	GMCL2	chr5	178179505	178192371
GMDS_chr6_1618806_2250605	1/1	a0001	372	165	67	26	48	6	16	copy fasta	GMDS	chr6	1618806	2250605
GMDS_chr6_1618806_2250605	0/0	a0002	372	1	1	0	0	0	0	copy fasta	GMDS	chr6	1618806	2250605
GMEB1_chr1_28663784_28724353	1/1	a0001	563	289	90	64	84	17	32	copy fasta	GMEB1	chr1	28663784	28724353
GMEB1_chr1_28663784_28724353	0/0	a0002	563	1	0	0	0	1	0	copy fasta	GMEB1	chr1	28663784	28724353
GMEB2_chr20_63582605_63632101	1/1	a0001	530	328	88	70	113	15	40	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	a0002	530	1	0	0	1	0	0	copy fasta	GMEB2	chr20	63582605	63632101
GMEB2_chr20_63582605_63632101	0/0	a0003	530	1	0	0	0	1	0	copy fasta	GMEB2	chr20	63582605	63632101
GMFB_chr14_54469485_54493980	1/1	a0001	142	353	92	56	159	10	34	copy fasta	GMFB	chr14	54469485	54493980
GMFB_chr14_54469485_54493980	0/0	a0002	142	1	0	0	1	0	0	copy fasta	GMFB	chr14	54469485	54493980
GMFG_chr19_39323359_39341043	1/1	a0001	142	371	83	72	164	12	38	copy fasta	GMFG	chr19	39323359	39341043
GMFG_chr19_39323359_39341043	0/0	a0002	142	2	2	0	0	0	0	copy fasta	GMFG	chr19	39323359	39341043
GMFG_chr19_39323359_39341043	0/0	a0003	142	1	1	0	0	0	0	copy fasta	GMFG	chr19	39323359	39341043
GMIP_chr19_19624476_19648657	1/1	a0001	970	358	86	71	143	16	40	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	a0002	393	21	1	4	13	0	3	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	a0003	970	15	1	6	5	0	3	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	a0004	791	10	3	2	5	0	0	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	a0005	970	3	3	0	0	0	0	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	a0006	970	2	2	0	0	0	0	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	a0007	970	2	0	1	0	0	1	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	a0008	970	1	0	0	1	0	0	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	a0009	970	1	0	0	1	0	0	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	a0010	970	1	0	0	1	0	0	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	a0011	970	1	0	0	1	0	0	copy fasta	GMIP	chr19	19624476	19648657
GMIP_chr19_19624476_19648657	0/0	a0012	970	1	0	0	0	0	1	copy fasta	GMIP	chr19	19624476	19648657
GML_chr8_142829801_142851851	1/1	a0001	158	310	68	57	130	12	41	copy fasta	GML	chr8	142829801	142851851
GML_chr8_142829801_142851851	0/0	a0002	158	110	21	11	72	0	6	copy fasta	GML	chr8	142829801	142851851
GML_chr8_142829801_142851851	0/0	a0003	158	1	0	0	0	0	1	copy fasta	GML	chr8	142829801	142851851
GML_chr8_142829801_142851851	0/0	a0004	158	1	1	0	0	0	0	copy fasta	GML	chr8	142829801	142851851
GMNC_chr3_190847737_190867694	1/0	a0001	334	277	57	54	138	9	18	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/1	a0002	334	202	41	27	97	9	27	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	a0003	334	4	0	0	1	0	3	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	a0004	334	2	1	1	0	0	0	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	a0005	334	1	1	0	0	0	0	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	a0006	334	1	0	0	1	0	0	copy fasta	GMNC	chr3	190847737	190867694
GMNC_chr3_190847737_190867694	0/0	a0007	334	1	0	0	1	0	0	copy fasta	GMNC	chr3	190847737	190867694
GMNN_chr6_24769937_24791099	1/1	a0001	209	243	56	52	83	14	36	copy fasta	GMNN	chr6	24769937	24791099
GMNN_chr6_24769937_24791099	0/0	a0002	209	133	18	19	89	0	7	copy fasta	GMNN	chr6	24769937	24791099
GMNN_chr6_24769937_24791099	0/0	a0003	209	33	17	3	12	0	1	copy fasta	GMNN	chr6	24769937	24791099
GMNN_chr6_24769937_24791099	0/0	a0004	209	1	1	0	0	0	0	copy fasta	GMNN	chr6	24769937	24791099
GMNN_chr6_24769937_24791099	0/0	a0005	209	1	0	0	1	0	0	copy fasta	GMNN	chr6	24769937	24791099
GMNN_chr6_24769937_24791099	0/0	a0006	209	1	0	0	1	0	0	copy fasta	GMNN	chr6	24769937	24791099
GMPPA_chr2_219493891_219511989	1/1	a0001	420	376	98	70	144	17	45	copy fasta	GMPPA	chr2	219493891	219511989
GMPPA_chr2_219493891_219511989	0/0	a0002	420	2	0	2	0	0	0	copy fasta	GMPPA	chr2	219493891	219511989
GMPPA_chr2_219493891_219511989	0/0	a0003	420	1	0	0	0	0	1	copy fasta	GMPPA	chr2	219493891	219511989