JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GNAI3_chr1_109543615_109605195	1/1	a0001	354	306	89	50	123	8	34	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	a0002	354	3	0	0	3	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAI3_chr1_109543615_109605195	0/0	a0003	354	1	1	0	0	0	0	copy fasta	GNAI3	chr1	109543615	109605195
GNAL_chr18_11684264_11890685	1/1	a0001	458	212	73	27	78	6	26	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	a0002	460	21	7	6	4	0	4	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	a0003	460	9	8	1	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11684264_11890685	0/0	a0004	456	6	6	0	0	0	0	copy fasta	GNAL	chr18	11684264	11890685
GNAL_chr18_11747085_11890685	1/1	a0001	381	283	94	36	109	8	34	copy fasta	GNAL	chr18	11747085	11890685
GNAL_chr18_11747085_11890685	0/0	a0002	381	1	0	0	1	0	0	copy fasta	GNAL	chr18	11747085	11890685
GNAO1_chr16_56186489_56362444	1/1	a0001	354	297	70	50	117	18	40	copy fasta	GNAO1	chr16	56186489	56362444
GNAO1_chr16_56186489_56362444	0/0	a0002	354	1	0	0	1	0	0	copy fasta	GNAO1	chr16	56186489	56362444
GNAQ_chr9_77711097_78036811	1/1	a0001	359	281	78	54	111	6	30	copy fasta	GNAQ	chr9	77711097	78036811
GNAQ_chr9_77711097_78036811	0/0	a0002	359	1	0	0	1	0	0	copy fasta	GNAQ	chr9	77711097	78036811
GNAS_chr20_58834748_58916192	1/1	a0001	245	292	87	69	92	14	28	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	a0002	245	6	5	1	0	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	a0003	245	2	0	0	2	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	a0004	245	1	0	0	1	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58834748_58916192	0/0	a0005	245	1	0	0	1	0	0	copy fasta	GNAS	chr20	58834748	58916192
GNAS_chr20_58847716_58916192	1/1	a0001	1037	250	61	54	94	14	25	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	a0002	1049	32	23	6	2	0	1	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	a0003	1037	8	1	6	0	0	1	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	a0004	1040	4	4	0	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	a0005	1049	4	4	0	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	a0006	1037	1	0	0	1	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	a0007	1028	1	1	0	0	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	a0008	1037	1	0	0	0	0	1	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58847716_58916192	0/0	a0009	1037	1	0	0	1	0	0	copy fasta	GNAS	chr20	58847716	58916192
GNAS_chr20_58886421_58916192	1/1	a0001	394	432	96	80	196	16	42	copy fasta	GNAS	chr20	58886421	58916192
GNAT1_chr3_50186610_50202696	1/1	a0001	350	363	93	68	146	16	38	copy fasta	GNAT1	chr3	50186610	50202696
GNAT1_chr3_50186610_50202696	0/0	a0002	350	2	0	0	2	0	0	copy fasta	GNAT1	chr3	50186610	50202696
GNAT1_chr3_50186610_50202696	0/0	a0003	350	1	1	0	0	0	0	copy fasta	GNAT1	chr3	50186610	50202696
GNAT2_chr1_109598091_109624616	1/1	a0001	354	294	92	51	100	12	37	copy fasta	GNAT2	chr1	109598091	109624616
GNAT2_chr1_109598091_109624616	0/0	a0002	354	49	0	1	44	0	4	copy fasta	GNAT2	chr1	109598091	109624616
GNAT2_chr1_109598091_109624616	0/0	a0003	354	1	0	0	0	0	1	copy fasta	GNAT2	chr1	109598091	109624616
GNAT3_chr7_80453635_80517064	1/1	a0001	354	329	88	62	129	14	34	copy fasta	GNAT3	chr7	80453635	80517064
GNAT3_chr7_80453635_80517064	0/0	a0002	354	2	2	0	0	0	0	copy fasta	GNAT3	chr7	80453635	80517064
GNAT3_chr7_80453635_80517064	0/0	a0003	354	1	1	0	0	0	0	copy fasta	GNAT3	chr7	80453635	80517064
GNAT3_chr7_80453635_80517064	0/0	a0004	354	1	1	0	0	0	0	copy fasta	GNAT3	chr7	80453635	80517064
GNAT3_chr7_80453635_80517064	0/0	a0005	354	1	0	0	1	0	0	copy fasta	GNAT3	chr7	80453635	80517064
GNAZ_chr22_23065519_23130032	1/1	a0001	355	333	92	62	122	14	41	copy fasta	GNAZ	chr22	23065519	23130032
GNAZ_chr22_23065519_23130032	0/0	a0002	355	1	0	0	0	0	1	copy fasta	GNAZ	chr22	23065519	23130032
GNB1L_chr22_19778223_19859874	1/0	a0001	327	181	75	32	52	7	14	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	a0002	327	76	2	9	57	4	4	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	a0003	327	37	3	15	8	2	9	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	a0004	327	12	0	0	10	0	2	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	a0005	327	6	0	1	1	0	4	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	a0006	327	4	0	2	2	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	a0007	327	2	0	0	0	1	1	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/1	a0008	327	2	1	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	a0009	327	2	2	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874