JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GNB1L_chr22_19778223_19859874	0/0	a0010	327	1	0	0	0	0	1	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	a0011	327	1	0	1	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	a0012	327	1	0	0	0	0	1	copy fasta	GNB1L	chr22	19778223	19859874
GNB1L_chr22_19778223_19859874	0/0	a0013	327	1	1	0	0	0	0	copy fasta	GNB1L	chr22	19778223	19859874
GNB1_chr1_1780286_1896087	1/1	a0001	340	336	90	48	146	14	36	copy fasta	GNB1	chr1	1780286	1896087
GNB2_chr7_100668740_100684169	1/1	a0001	340	371	89	62	158	12	48	copy fasta	GNB2	chr7	100668740	100684169
GNB2_chr7_100668740_100684169	0/0	a0002	340	3	3	0	0	0	0	copy fasta	GNB2	chr7	100668740	100684169
GNB3_chr12_6835925_6852393	1/1	a0001	340	409	91	69	189	13	45	copy fasta	GNB3	chr12	6835925	6852393
GNB3_chr12_6835925_6852393	0/0	a0002	340	11	0	7	0	3	1	copy fasta	GNB3	chr12	6835925	6852393
GNB3_chr12_6835925_6852393	0/0	a0003	340	1	1	0	0	0	0	copy fasta	GNB3	chr12	6835925	6852393
GNB3_chr12_6835925_6852393	0/0	a0004	340	1	0	0	1	0	0	copy fasta	GNB3	chr12	6835925	6852393
GNB4_chr3_179391088_179456470	1/1	a0001	340	397	92	78	169	10	46	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	a0002	58	1	0	0	1	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	a0003	340	1	0	0	1	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB4_chr3_179391088_179456470	0/0	a0004	340	1	0	0	1	0	0	copy fasta	GNB4	chr3	179391088	179456470
GNB5_chr15_52110100_52196392	1/1	a0001	395	362	86	74	154	10	36	copy fasta	GNB5	chr15	52110100	52196392
GNB5_chr15_52110100_52196392	0/0	a0002	395	2	2	0	0	0	0	copy fasta	GNB5	chr15	52110100	52196392
GNB5_chr15_52110100_52196392	0/0	a0003	395	1	0	0	1	0	0	copy fasta	GNB5	chr15	52110100	52196392
GNB5_chr15_52110100_52196392	0/0	a0004	265	1	0	0	1	0	0	copy fasta	GNB5	chr15	52110100	52196392
GNE_chr9_36209441_36263448	1/1	a0001	722	372	88	72	152	16	42	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36263448	0/0	a0002	722	2	0	0	2	0	0	copy fasta	GNE	chr9	36209441	36263448
GNE_chr9_36209441_36281978	1/1	a0001	753	354	84	72	138	16	42	copy fasta	GNE	chr9	36209441	36281978
GNE_chr9_36209441_36281978	0/0	a0002	753	2	0	0	2	0	0	copy fasta	GNE	chr9	36209441	36281978
GNG10_chr9_111656605_111675226	1/1	a0001	68	421	96	82	179	16	46	copy fasta	GNG10	chr9	111656605	111675226
GNG10_chr9_111656605_111675226	0/0	a0002	68	9	0	0	7	0	2	copy fasta	GNG10	chr9	111656605	111675226
GNG11_chr7_93916735_93933610	1/1	a0001	73	437	95	76	198	18	48	copy fasta	GNG11	chr7	93916735	93933610
GNG11_chr7_93916735_93933610	0/0	a0002	73	1	1	0	0	0	0	copy fasta	GNG11	chr7	93916735	93933610
GNG12_chr1_67696475_67838467	1/1	a0001	72	274	82	44	116	14	16	copy fasta	GNG12	chr1	67696475	67838467
GNG13_chr16_793041_805734	1/1	a0001	67	422	90	82	182	18	48	copy fasta	GNG13	chr16	793041	805734
GNG14_chr19_12682998_12693422	1/1	a0001	107	337	68	64	146	18	39	copy fasta	GNG14	chr19	12682998	12693422
GNG14_chr19_12682998_12693422	0/0	a0002	107	13	13	0	0	0	0	copy fasta	GNG14	chr19	12682998	12693422
GNG14_chr19_12682998_12693422	0/0	a0003	85	10	10	0	0	0	0	copy fasta	GNG14	chr19	12682998	12693422
GNG14_chr19_12682998_12693422	0/0	a0004	107	5	0	5	0	0	0	copy fasta	GNG14	chr19	12682998	12693422
GNG14_chr19_12682998_12693422	0/0	a0005	107	2	0	0	0	0	2	copy fasta	GNG14	chr19	12682998	12693422
GNG14_chr19_12682998_12693422	0/0	a0006	15	1	0	1	0	0	0	copy fasta	GNG14	chr19	12682998	12693422
GNG14_chr19_12682998_12693422	0/0	a0007	28	1	1	0	0	0	0	copy fasta	GNG14	chr19	12682998	12693422
GNG14_chr19_12682998_12693422	0/0	a0008	107	1	0	0	0	0	1	copy fasta	GNG14	chr19	12682998	12693422
GNG2_chr14_51855612_51974795	1/1	a0001	71	380	94	56	170	16	42	copy fasta	GNG2	chr14	51855612	51974795
GNG3_chr11_62702676_62714201	1/1	a0001	75	362	90	52	166	12	40	copy fasta	GNG3	chr11	62702676	62714201
GNG4_chr1_235542685_235654784	1/1	a0001	75	330	92	82	104	8	42	copy fasta	GNG4	chr1	235542685	235654784
GNG5B_chrX_110341454_110351973	1/1	a0001	68	236	66	37	108	5	18	copy fasta	GNG5B	chrX	110341454	110351973
GNG5_chr1_84493325_84511581	1/1	a0001	68	364	90	69	153	10	40	copy fasta	GNG5	chr1	84493325	84511581
GNG5_chr1_84493325_84511581	0/0	a0002	68	1	0	1	0	0	0	copy fasta	GNG5	chr1	84493325	84511581
GNG5_chr1_84493325_84511581	0/0	a0003	68	1	0	0	1	0	0	copy fasta	GNG5	chr1	84493325	84511581
GNG7_chr19_2506219_2707694	1/1	a0001	68	206	68	48	54	10	24	copy fasta	GNG7	chr19	2506219	2707694
GNG8_chr19_46628953_46641202	1/1	a0001	70	435	98	82	198	14	41	copy fasta	GNG8	chr19	46628953	46641202
GNG8_chr19_46628953_46641202	0/0	a0002	70	1	0	0	1	0	0	copy fasta	GNG8	chr19	46628953	46641202
GNG8_chr19_46628953_46641202	0/0	a0003	70	1	0	0	0	0	1	copy fasta	GNG8	chr19	46628953	46641202
GNG8_chr19_46628953_46641202	0/0	a0004	70	1	0	0	1	0	0	copy fasta	GNG8	chr19	46628953	46641202
GNGT1_chr7_93901567_93916265	1/1	a0001	74	404	76	74	188	18	46	copy fasta	GNGT1	chr7	93901567	93916265