Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AKAP13_chr15_85375603_85754355	0/0	a0018	2813	2	0	0	2	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0019	2813	2	2	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0020	2813	2	0	2	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0021	2813	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0022	2813	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0023	2813	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0024	2813	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0025	2813	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0026	2813	1	1	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0027	2813	1	0	0	0	0	1	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0028	2813	1	0	1	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0029	2813	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/1	a0030	2813	1	0	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0031	2813	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0032	2813	1	1	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0033	2813	1	1	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0034	2813	1	1	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0035	2813	1	1	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0036	2813	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0037	2813	1	1	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0038	2813	1	0	0	0	1	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0039	2813	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0040	2813	1	1	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0041	2813	1	1	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0042	2813	1	1	0	0	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP13_chr15_85375603_85754355	0/0	a0043	2813	1	0	0	1	0	0	copy fasta	AKAP13	chr15	85375603	85754355
AKAP14_chrX_119890893_119925716	1/1	a0001	197	301	76	54	127	10	32	copy fasta	AKAP14	chrX	119890893	119925716
AKAP14_chrX_119890893_119925716	0/0	a0002	91	1	0	0	1	0	0	copy fasta	AKAP14	chrX	119890893	119925716
AKAP14_chrX_119890893_119925716	0/0	a0003	197	1	0	1	0	0	0	copy fasta	AKAP14	chrX	119890893	119925716
AKAP14_chrX_119890893_119925716	0/0	a0004	98	1	0	0	0	1	0	copy fasta	AKAP14	chrX	119890893	119925716
AKAP17A_chrX_1586604_1607520	0/0	a0000	0	1	0	1	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/1	a0001	695	72	12	18	31	2	8	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	1/0	a0002	695	59	24	13	16	1	4	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	a0003	695	3	1	0	0	0	2	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	a0004	695	2	2	0	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	a0005	109	1	1	0	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	a0006	178	1	1	0	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	a0007	551	1	0	1	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	a0008	695	1	0	0	0	0	1	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	a0009	695	1	1	0	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	a0010	695	1	0	1	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	a0011	695	1	0	0	1	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	a0012	596	1	0	0	1	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	a0013	695	1	0	0	0	0	1	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	a0014	551	1	0	1	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	a0015	438	1	0	0	1	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	a0016	178	1	0	1	0	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	a0017	50	1	0	0	0	1	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP17A_chrX_1586604_1607520	0/0	a0018	11	1	0	0	1	0	0	copy fasta	AKAP17A	chrX	1586604	1607520
AKAP1_chr17_57080246_57126344	1/1	a0001	903	344	57	72	171	9	33	copy fasta	AKAP1	chr17	57080246	57126344