JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GNGT1_chr7_93901567_93916265	0/0	a0002	74	20	17	3	0	0	0	copy fasta	GNGT1	chr7	93901567	93916265
GNGT1_chr7_93901567_93916265	0/0	a0003	74	6	1	3	0	0	2	copy fasta	GNGT1	chr7	93901567	93916265
GNGT2_chr17_49201237_49215574	1/1	a0001	69	428	88	74	198	16	50	copy fasta	GNGT2	chr17	49201237	49215574
GNGT2_chr17_49201237_49215574	0/0	a0002	69	7	6	1	0	0	0	copy fasta	GNGT2	chr17	49201237	49215574
GNGT2_chr17_49201237_49215574	0/0	a0003	69	5	0	3	0	2	0	copy fasta	GNGT2	chr17	49201237	49215574
GNL1_chr6_30536381_30561489	0/1	a0001	607	392	86	71	184	11	39	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	a0002	607	2	0	1	0	0	1	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	a0003	607	1	0	0	0	1	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	a0004	607	1	0	1	0	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL1_chr6_30536381_30561489	0/0	a0005	607	1	0	1	0	0	0	copy fasta	GNL1	chr6	30536381	30561489
GNL2_chr1_37561816_37600937	1/1	a0001	731	369	79	66	159	17	46	copy fasta	GNL2	chr1	37561816	37600937
GNL2_chr1_37561816_37600937	0/0	a0002	731	1	0	1	0	0	0	copy fasta	GNL2	chr1	37561816	37600937
GNL2_chr1_37561816_37600937	0/0	a0003	731	1	0	1	0	0	0	copy fasta	GNL2	chr1	37561816	37600937
GNL2_chr1_37561816_37600937	0/0	a0004	731	1	1	0	0	0	0	copy fasta	GNL2	chr1	37561816	37600937
GNL2_chr1_37561816_37600937	0/0	a0005	731	1	1	0	0	0	0	copy fasta	GNL2	chr1	37561816	37600937
GNL2_chr1_37561816_37600937	0/0	a0006	731	1	1	0	0	0	0	copy fasta	GNL2	chr1	37561816	37600937
GNL2_chr1_37561816_37600937	0/0	a0007	731	1	0	0	1	0	0	copy fasta	GNL2	chr1	37561816	37600937
GNL2_chr1_37561816_37600937	0/0	a0008	731	1	0	0	0	1	0	copy fasta	GNL2	chr1	37561816	37600937
GNL3L_chrX_54525219_54572289	1/1	a0001	582	275	69	50	121	11	22	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	a0002	582	1	0	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3L_chrX_54525219_54572289	0/0	a0003	58	1	0	0	1	0	0	copy fasta	GNL3L	chrX	54525219	54572289
GNL3_chr3_52681032_52699497	1/1	a0001	549	199	35	41	83	11	27	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	a0002	549	126	8	25	83	4	6	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	a0003	549	46	37	3	2	1	3	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	a0004	548	8	6	2	0	0	0	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	a0005	549	3	2	1	0	0	0	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	a0006	549	2	1	1	0	0	0	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	a0007	549	1	0	0	1	0	0	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	a0008	549	1	1	0	0	0	0	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	a0009	549	1	0	0	1	0	0	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	a0010	549	1	1	0	0	0	0	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	a0011	549	1	1	0	0	0	0	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	a0012	549	1	1	0	0	0	0	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	a0013	549	1	0	0	0	0	1	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	a0014	549	1	0	1	0	0	0	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	a0015	549	1	0	0	0	0	1	copy fasta	GNL3	chr3	52681032	52699497
GNL3_chr3_52681032_52699497	0/0	a0016	549	1	1	0	0	0	0	copy fasta	GNL3	chr3	52681032	52699497
GNLY_chr2_85689358_85703852	1/0	a0001	145	242	78	45	82	10	26	copy fasta	GNLY	chr2	85689358	85703852
GNLY_chr2_85689358_85703852	0/1	a0002	145	141	5	30	82	4	19	copy fasta	GNLY	chr2	85689358	85703852
GNLY_chr2_85689358_85703852	0/0	a0003	3	8	6	2	0	0	0	copy fasta	GNLY	chr2	85689358	85703852
GNLY_chr2_85689358_85703852	0/0	a0004	145	2	2	0	0	0	0	copy fasta	GNLY	chr2	85689358	85703852
GNLY_chr2_85689358_85703852	0/0	a0005	145	2	1	1	0	0	0	copy fasta	GNLY	chr2	85689358	85703852
GNLY_chr2_85689358_85703852	0/0	a0006	145	1	1	0	0	0	0	copy fasta	GNLY	chr2	85689358	85703852
GNLY_chr2_85689358_85703852	0/0	a0007	145	1	0	0	0	0	1	copy fasta	GNLY	chr2	85689358	85703852
GNLY_chr2_85689358_85703852	0/0	a0008	145	1	1	0	0	0	0	copy fasta	GNLY	chr2	85689358	85703852
GNMT_chr6_42955754_42968880	1/1	a0001	295	386	99	74	160	10	41	copy fasta	GNMT	chr6	42955754	42968880
GNMT_chr6_42955754_42968880	0/0	a0002	295	1	1	0	0	0	0	copy fasta	GNMT	chr6	42955754	42968880
GNMT_chr6_42955754_42968880	0/0	a0003	295	1	0	0	0	0	1	copy fasta	GNMT	chr6	42955754	42968880
GNPAT_chr1_231236212_231282973	1/1	a0001	680	300	67	44	147	11	29	copy fasta	GNPAT	chr1	231236212	231282973
GNPAT_chr1_231236212_231282973	0/0	a0002	680	48	7	12	21	3	5	copy fasta	GNPAT	chr1	231236212	231282973