JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GNPAT_chr1_231236212_231282973	0/0	a0003	680	6	6	0	0	0	0	copy fasta	GNPAT	chr1	231236212	231282973
GNPAT_chr1_231236212_231282973	0/0	a0004	680	4	4	0	0	0	0	copy fasta	GNPAT	chr1	231236212	231282973
GNPAT_chr1_231236212_231282973	0/0	a0005	680	1	1	0	0	0	0	copy fasta	GNPAT	chr1	231236212	231282973
GNPAT_chr1_231236212_231282973	0/0	a0006	680	1	1	0	0	0	0	copy fasta	GNPAT	chr1	231236212	231282973
GNPDA1_chr5_141995671_142018027	1/0	a0001	289	421	92	82	184	14	48	copy fasta	GNPDA1	chr5	141995671	142018027
GNPDA1_chr5_141995671_142018027	0/0	a0002	289	1	0	0	1	0	0	copy fasta	GNPDA1	chr5	141995671	142018027
GNPDA1_chr5_141995671_142018027	0/0	a0003	272	1	0	0	1	0	0	copy fasta	GNPDA1	chr5	141995671	142018027
GNPDA2_chr4_44696795_44731556	1/1	a0001	276	412	96	76	196	10	32	copy fasta	GNPDA2	chr4	44696795	44731556
GNPNAT1_chr14_52770193_52796607	1/1	a0001	184	389	80	78	182	12	35	copy fasta	GNPNAT1	chr14	52770193	52796607
GNPNAT1_chr14_52770193_52796607	0/0	a0002	184	1	0	0	0	0	1	copy fasta	GNPNAT1	chr14	52770193	52796607
GNPTAB_chr12_101740499_101835959	1/1	a0001	1256	361	73	56	190	11	29	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	a0002	1256	7	5	1	0	1	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	a0003	1256	7	7	0	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	a0004	1256	6	5	1	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	a0005	1256	2	2	0	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	a0006	1256	2	0	2	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	a0007	1256	2	2	0	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	a0008	1256	1	0	1	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	a0009	1256	1	0	1	0	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	a0010	1256	1	0	0	1	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	a0011	1256	1	0	0	1	0	0	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTAB_chr12_101740499_101835959	0/0	a0012	1256	1	0	0	0	0	1	copy fasta	GNPTAB	chr12	101740499	101835959
GNPTG_chr16_1346931_1369113	0/0	a0000	0	1	1	0	0	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	1/1	a0001	305	368	88	71	143	18	46	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	a0002	305	2	0	0	2	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	a0003	305	1	1	0	0	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	a0004	305	1	0	1	0	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	a0005	305	1	1	0	0	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	a0006	305	1	1	0	0	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	a0007	305	1	1	0	0	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	a0008	305	1	0	0	1	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNPTG_chr16_1346931_1369113	0/0	a0009	305	1	1	0	0	0	0	copy fasta	GNPTG	chr16	1346931	1369113
GNRH1_chr8_25414258_25429261	1/0	a0001	92	289	84	56	96	12	40	copy fasta	GNRH1	chr8	25414258	25429261
GNRH1_chr8_25414258_25429261	0/1	a0002	92	104	2	11	84	2	4	copy fasta	GNRH1	chr8	25414258	25429261
GNRH1_chr8_25414258_25429261	0/0	a0003	92	4	4	0	0	0	0	copy fasta	GNRH1	chr8	25414258	25429261
GNRH1_chr8_25414258_25429261	0/0	a0004	92	1	0	1	0	0	0	copy fasta	GNRH1	chr8	25414258	25429261
GNRH2_chr20_3038622_3050747	0/0	a0000	0	101	5	17	60	3	16	copy fasta	GNRH2	chr20	3038622	3050747
GNRH2_chr20_3038622_3050747	1/1	a0001	113	337	88	53	145	15	34	copy fasta	GNRH2	chr20	3038622	3050747
GNRH2_chr20_3038622_3050747	0/0	a0002	113	7	5	2	0	0	0	copy fasta	GNRH2	chr20	3038622	3050747
GNRH2_chr20_3038622_3050747	0/0	a0003	113	1	0	0	1	0	0	copy fasta	GNRH2	chr20	3038622	3050747
GNRHR_chr4_67732118_67759388	1/1	a0001	328	384	93	76	162	17	34	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	a0002	328	2	0	0	2	0	0	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	a0003	187	1	1	0	0	0	0	copy fasta	GNRHR	chr4	67732118	67759388
GNRHR_chr4_67732118_67759388	0/0	a0004	328	1	0	0	0	1	0	copy fasta	GNRHR	chr4	67732118	67759388
GNS_chr12_64708449_64764406	1/1	a0001	552	343	85	63	137	14	42	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	0/0	a0002	552	7	7	0	0	0	0	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	0/0	a0003	552	1	0	0	1	0	0	copy fasta	GNS	chr12	64708449	64764406
GNS_chr12_64708449_64764406	0/0	a0004	552	1	0	1	0	0	0	copy fasta	GNS	chr12	64708449	64764406
GOLGA1_chr9_124873275_124946083	0/0	a0001	767	183	41	44	69	10	19	copy fasta	GOLGA1	chr9	124873275	124946083
GOLGA1_chr9_124873275_124946083	0/1	a0002	767	167	29	16	104	4	13	copy fasta	GOLGA1	chr9	124873275	124946083