JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GOLGA3_chr12_132763914_132833869	0/0	a0017	1498	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	a0018	1498	1	1	0	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	a0019	1498	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	a0020	1498	1	0	1	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	a0021	1498	1	0	0	0	0	1	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	a0022	1498	1	0	1	0	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	a0023	85	1	0	0	1	0	0	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA3_chr12_132763914_132833869	0/0	a0024	1498	1	0	0	0	0	1	copy fasta	GOLGA3	chr12	132763914	132833869
GOLGA4_chr3_37238271_37371879	1/1	a0001	2230	154	50	33	47	5	17	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	a0002	2230	70	8	20	35	2	5	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	a0003	2230	11	6	5	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	a0004	2230	8	4	0	0	0	4	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	a0005	2230	6	6	0	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	a0006	2230	6	6	0	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	a0007	2230	5	5	0	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	a0008	2230	2	2	0	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	a0009	2230	1	0	0	1	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	a0010	2230	1	0	0	1	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	a0011	2230	1	1	0	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	a0012	2230	1	1	0	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	a0013	2230	1	0	0	0	0	1	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	a0014	2230	1	1	0	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	a0015	2230	1	0	1	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	a0016	2230	1	0	1	0	0	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	a0017	2230	1	0	0	0	0	1	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA4_chr3_37238271_37371879	0/0	a0018	2230	1	0	0	0	1	0	copy fasta	GOLGA4	chr3	37238271	37371879
GOLGA5_chr14_92789305_92844947	0/0	a0001	731	239	72	47	84	9	27	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	1/1	a0002	731	69	4	8	41	4	10	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	a0003	731	62	1	17	36	1	7	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	a0004	731	4	0	0	4	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	a0005	731	4	0	0	4	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	a0006	731	2	0	0	2	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	a0007	731	2	0	0	2	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	a0008	731	1	1	0	0	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	a0009	731	1	0	0	1	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	a0010	731	1	0	0	1	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	a0011	731	1	0	1	0	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	a0012	731	1	1	0	0	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	a0013	731	1	0	1	0	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	a0014	731	1	0	0	1	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA5_chr14_92789305_92844947	0/0	a0015	731	1	1	0	0	0	0	copy fasta	GOLGA5	chr14	92789305	92844947
GOLGA6A_chr15_74064857_74087550	1/0	a0001	693	67	6	16	26	10	8	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	a0002	693	14	1	0	11	1	1	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	a0003	693	11	8	2	1	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	a0004	693	6	2	3	1	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	a0005	693	4	4	0	0	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	a0006	693	4	0	2	2	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	a0007	693	3	3	0	0	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	a0008	693	3	1	2	0	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	a0009	693	3	3	0	0	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550