JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GOLGA6A_chr15_74064857_74087550	0/0	a0010	1	2	2	0	0	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	a0011	693	2	0	0	0	2	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	a0012	693	2	2	0	0	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	a0013	693	1	1	0	0	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	a0014	693	1	1	0	0	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	a0015	693	1	0	0	0	0	1	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	a0016	693	1	1	0	0	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	a0017	693	1	0	0	1	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	a0018	693	1	1	0	0	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	a0019	381	1	1	0	0	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	a0020	693	1	1	0	0	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	a0021	693	1	0	0	0	0	1	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	a0022	686	1	1	0	0	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	a0023	693	1	1	0	0	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	a0024	693	1	0	0	1	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	a0025	693	1	0	0	0	1	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	a0026	693	1	0	1	0	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	a0027	693	1	0	0	0	0	1	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6A_chr15_74064857_74087550	0/0	a0028	693	1	0	0	1	0	0	copy fasta	GOLGA6A	chr15	74064857	74087550
GOLGA6B_chr15_72649697_72674599	0/0	a0001	693	173	11	39	88	6	29	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	a0002	693	52	31	1	18	2	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	1/0	a0003	693	51	27	2	20	0	1	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	a0004	693	17	13	4	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	a0005	693	10	0	0	10	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	a0006	693	5	0	5	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	a0007	693	3	1	2	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	a0008	693	2	2	0	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	a0009	693	2	1	1	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	a0010	693	2	0	2	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	a0011	693	2	0	0	2	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	a0012	693	1	0	0	1	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	a0013	693	1	1	0	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	a0014	693	1	0	1	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	a0015	693	1	1	0	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	a0016	693	1	1	0	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	a0017	693	1	0	0	1	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	a0018	693	1	1	0	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	a0019	693	1	1	0	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	a0020	693	1	0	0	1	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	a0021	693	1	0	0	1	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	a0022	693	1	0	1	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	a0023	423	1	1	0	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	a0024	700	1	1	0	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6B_chr15_72649697_72674599	0/0	a0025	693	1	1	0	0	0	0	copy fasta	GOLGA6B	chr15	72649697	72674599
GOLGA6C_chr15_75253334_75278455	0/0	a0000	0	2	0	0	0	1	1	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	1/1	a0001	693	112	23	19	53	6	9	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0002	693	9	0	4	5	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0003	693	9	0	0	9	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0004	693	8	1	0	7	0	0	copy fasta	GOLGA6C	chr15	75253334	75278455
GOLGA6C_chr15_75253334_75278455	0/0	a0005	693	7	2	1	3	1	0	copy fasta	GOLGA6C	chr15	75253334	75278455