JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GOLGA6L22_chr15_22453903_22474226	0/0	a0011	878	2	0	2	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0012	928	2	0	0	2	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0013	810	2	0	0	2	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0014	860	2	0	0	2	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0015	835	2	2	0	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0016	822	1	0	1	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0017	896	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0018	872	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0019	859	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0020	852	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0021	817	1	0	0	0	0	1	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0022	866	1	0	0	0	1	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0023	804	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0024	866	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0025	846	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0026	866	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0027	817	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0028	833	1	1	0	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0029	909	1	0	0	0	1	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0030	811	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0031	860	1	0	1	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0032	777	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0033	805	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0034	853	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0035	797	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0036	860	1	0	0	0	1	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0037	804	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0038	811	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0039	866	1	0	0	0	1	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0040	854	1	0	1	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0041	795	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0042	1040	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0043	848	1	0	1	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0044	799	1	0	1	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0045	841	1	0	0	0	0	1	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0046	895	1	0	0	1	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0047	854	1	0	0	0	0	1	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0048	828	1	1	0	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0049	835	1	1	0	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0050	836	1	0	1	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0051	782	1	1	0	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L22_chr15_22453903_22474226	0/0	a0052	789	1	1	0	0	0	0	copy fasta	GOLGA6L22	chr15	22453903	22474226
GOLGA6L24_chr15_28342851_28363084	0/0	a0001	826	55	0	17	13	10	15	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0002	838	26	0	6	11	0	9	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0003	826	26	0	1	24	0	1	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0004	838	12	0	1	11	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0005	850	7	0	0	7	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0006	826	7	0	2	2	2	1	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0007	838	6	1	0	5	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084
GOLGA6L24_chr15_28342851_28363084	0/0	a0008	833	5	0	3	2	0	0	copy fasta	GOLGA6L24	chr15	28342851	28363084