Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
AKAP1_chr17_57080246_57126344	0/0	a0002	903	18	1	6	2	2	7	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	a0003	903	11	9	0	2	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	a0004	896	7	7	0	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	a0005	903	7	7	0	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	a0006	903	3	0	2	0	1	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	a0007	903	2	0	0	2	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	a0008	903	1	0	0	1	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	a0009	903	1	1	0	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	a0010	903	1	0	1	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP1_chr17_57080246_57126344	0/0	a0011	903	1	0	1	0	0	0	copy fasta	AKAP1	chr17	57080246	57126344
AKAP3_chr12_4610518_4654051	0/0	a0001	853	201	49	57	64	15	16	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	a0002	853	75	13	3	53	1	5	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	a0003	853	42	1	7	26	1	7	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	a0004	853	40	4	2	28	0	6	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	a0005	853	20	0	1	19	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	1/0	a0006	853	13	12	0	0	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	a0007	853	4	3	0	0	0	1	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	a0008	863	4	4	0	0	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	a0009	853	3	3	0	0	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	a0010	853	3	3	0	0	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	a0011	853	2	2	0	0	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	a0012	853	2	2	0	0	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	a0013	853	2	1	0	0	1	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	a0014	853	1	0	0	1	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/1	a0015	853	1	0	0	0	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	a0016	853	1	0	0	0	0	1	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	a0017	853	1	1	0	0	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	a0018	853	1	1	0	0	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	a0019	853	1	1	0	0	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP3_chr12_4610518_4654051	0/0	a0020	853	1	0	0	1	0	0	copy fasta	AKAP3	chr12	4610518	4654051
AKAP4_chrX_50185777_50206007	1/1	a0001	854	252	52	40	128	6	24	copy fasta	AKAP4	chrX	50185777	50206007
AKAP4_chrX_50185777_50206007	0/0	a0002	854	19	19	0	0	0	0	copy fasta	AKAP4	chrX	50185777	50206007
AKAP4_chrX_50185777_50206007	0/0	a0003	854	6	6	0	0	0	0	copy fasta	AKAP4	chrX	50185777	50206007
AKAP4_chrX_50185777_50206007	0/0	a0004	854	6	0	0	6	0	0	copy fasta	AKAP4	chrX	50185777	50206007
AKAP4_chrX_50185777_50206007	0/0	a0005	854	1	0	0	1	0	0	copy fasta	AKAP4	chrX	50185777	50206007
AKAP4_chrX_50185777_50206007	0/0	a0006	854	1	0	0	0	1	0	copy fasta	AKAP4	chrX	50185777	50206007
AKAP4_chrX_50185777_50206007	0/0	a0007	854	1	0	1	0	0	0	copy fasta	AKAP4	chrX	50185777	50206007
AKAP4_chrX_50185777_50206007	0/0	a0008	854	1	1	0	0	0	0	copy fasta	AKAP4	chrX	50185777	50206007
AKAP5_chr14_64460499_64479503	0/1	a0001	427	369	75	70	178	10	35	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	1/0	a0002	427	20	0	0	17	0	2	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	a0003	427	15	0	6	0	4	5	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	a0004	427	13	11	2	0	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	a0005	427	6	6	0	0	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP5_chr14_64460499_64479503	0/0	a0006	427	3	0	0	3	0	0	copy fasta	AKAP5	chr14	64460499	64479503
AKAP6_chr14_32324298_32842684	0/0	a0001	2319	43	26	2	9	0	6	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/1	a0002	2319	23	5	6	7	2	2	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	1/0	a0003	2319	23	6	5	5	1	5	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	a0004	2319	16	9	3	1	0	3	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	a0005	2319	7	4	0	3	0	0	copy fasta	AKAP6	chr14	32324298	32842684
AKAP6_chr14_32324298_32842684	0/0	a0006	2319	6	6	0	0	0	0	copy fasta	AKAP6	chr14	32324298	32842684