JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GOLGA6L4_chr15_84230773_84250358	0/0	a0009	609	7	7	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0010	581	6	6	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0011	575	5	0	0	5	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0012	595	4	0	0	4	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0013	581	3	0	0	3	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0014	616	3	0	2	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0015	581	3	0	0	3	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0016	616	3	0	0	3	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0017	581	3	3	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0018	581	3	3	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0019	574	2	0	2	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0020	581	2	0	0	2	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0021	609	2	0	0	2	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0022	616	2	0	2	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0023	581	2	2	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0024	581	2	2	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0025	1	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	1/0	a0026	574	1	0	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0027	581	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0028	581	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0029	581	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0030	616	1	0	1	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0031	574	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0032	581	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0033	616	1	0	1	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0034	468	1	0	0	0	0	1	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0035	609	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0036	616	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0037	581	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0038	609	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0039	575	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0040	581	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0041	609	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0042	609	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0043	581	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0044	440	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0045	581	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0046	602	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0047	581	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0048	496	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0049	581	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0050	468	1	1	0	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0051	574	1	0	0	0	0	1	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0052	607	1	0	0	1	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0053	334	1	0	0	0	0	1	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L4_chr15_84230773_84250358	0/0	a0054	581	1	0	1	0	0	0	copy fasta	GOLGA6L4	chr15	84230773	84250358
GOLGA6L6_chr15_20526856_20546800	0/0	a0001	473	62	7	6	42	0	7	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	1/0	a0002	724	35	4	3	23	1	3	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0003	734	17	0	0	15	0	2	copy fasta	GOLGA6L6	chr15	20526856	20546800
GOLGA6L6_chr15_20526856_20546800	0/0	a0004	716	15	0	2	12	1	0	copy fasta	GOLGA6L6	chr15	20526856	20546800