JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GOLGA6L9_chr15_82424816_82444153	0/0	a0009	439	7	0	0	4	1	2	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	a0010	432	6	5	1	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	a0011	432	5	0	3	0	0	2	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	a0012	432	5	0	0	5	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	a0013	432	5	5	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	a0014	438	3	3	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	a0015	432	3	3	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	a0016	432	2	2	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	a0017	432	2	2	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	a0018	438	1	0	0	1	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	a0019	432	1	1	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	a0020	432	1	0	1	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	a0021	432	1	1	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	a0022	432	1	0	1	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	a0023	432	1	0	0	1	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	a0024	432	1	0	1	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	a0025	432	1	0	0	1	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	a0026	438	1	1	0	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	a0027	432	1	0	1	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	a0028	425	1	0	1	0	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA6L9_chr15_82424816_82444153	0/0	a0029	432	1	0	0	1	0	0	copy fasta	GOLGA6L9	chr15	82424816	82444153
GOLGA7B_chr10_97844843_97876578	1/1	a0001	167	336	94	62	128	16	34	copy fasta	GOLGA7B	chr10	97844843	97876578
GOLGA7_chr8_41485582_41515980	1/1	a0001	137	349	86	74	135	18	34	copy fasta	GOLGA7	chr8	41485582	41515980
GOLGA7_chr8_41485582_41515980	0/0	a0002	137	1	0	0	1	0	0	copy fasta	GOLGA7	chr8	41485582	41515980
GOLGA8A_chr15_34374068_34442808	0/0	a0001	603	73	11	11	38	4	9	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0002	603	36	0	7	21	1	7	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0003	603	27	1	12	7	4	3	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0004	603	20	0	4	11	1	4	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0005	603	11	6	2	0	3	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	1/0	a0006	603	10	9	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0007	603	8	8	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0008	603	6	5	1	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0009	603	5	5	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0010	603	4	4	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0011	603	4	0	1	3	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0012	603	4	0	1	1	1	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0013	603	3	3	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0014	603	3	3	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0015	603	2	2	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0016	603	2	2	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0017	603	2	2	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0018	603	2	2	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0019	603	2	2	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0020	603	2	0	0	2	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0021	603	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0022	603	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0023	603	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0024	603	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0025	603	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0026	603	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808