JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
GOLGA8A_chr15_34374068_34442808	0/0	a0027	243	1	0	0	0	0	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0028	603	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0029	603	1	0	0	0	0	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0030	603	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0031	603	1	0	1	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0032	603	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0033	603	1	1	0	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0034	603	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0035	603	1	0	1	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0036	603	1	0	0	0	0	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0037	603	1	0	0	0	0	1	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0038	603	1	0	1	0	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8A_chr15_34374068_34442808	0/0	a0039	603	1	0	0	1	0	0	copy fasta	GOLGA8A	chr15	34374068	34442808
GOLGA8B_chr15_34520095_34588651	0/1	a0001	603	97	15	17	52	2	10	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	a0002	603	47	10	8	25	0	4	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	a0003	603	12	0	6	3	0	3	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	a0004	603	10	10	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	a0005	603	4	4	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	a0006	603	4	3	0	0	0	1	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	a0007	603	3	0	2	0	1	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	a0008	603	2	2	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	a0009	603	2	0	0	1	0	1	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	a0010	603	2	2	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	a0011	603	2	0	2	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	a0012	603	1	0	0	0	0	1	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	a0013	603	1	1	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	a0014	603	1	0	0	1	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	a0015	603	1	0	0	1	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	a0016	603	1	0	0	1	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	a0017	603	1	1	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	1/0	a0018	603	1	0	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	a0019	603	1	0	1	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	a0020	610	1	0	0	1	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	a0021	603	1	0	0	0	1	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	a0022	603	1	1	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	a0023	603	1	1	0	0	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8B_chr15_34520095_34588651	0/0	a0024	39	1	0	0	1	0	0	copy fasta	GOLGA8B	chr15	34520095	34588651
GOLGA8F_chr15_28373664_28397021	0/0	a0001	636	88	3	25	35	13	12	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	a0002	636	72	19	3	44	0	6	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	a0003	636	46	4	7	29	1	5	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	a0004	636	13	0	1	12	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	a0005	629	12	2	4	1	0	5	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	a0006	636	4	4	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	a0007	636	4	2	0	1	0	1	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	a0008	636	3	2	1	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	a0009	636	3	3	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	a0010	636	3	0	0	3	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	a0011	636	3	0	0	1	0	2	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	a0012	636	2	0	0	1	0	1	copy fasta	GOLGA8F	chr15	28373664	28397021
GOLGA8F_chr15_28373664_28397021	0/0	a0013	636	1	1	0	0	0	0	copy fasta	GOLGA8F	chr15	28373664	28397021